View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_13 (Length: 285)
Name: NF17394_low_13
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_13 |
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| [»] chr2 (6 HSPs) |
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| [»] scaffold0633 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 41650397 - 41650130
Alignment:
| Q |
18 |
atgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaac |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41650397 |
atgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaacccataattggaaaccaaaac |
41650298 |
T |
|
| Q |
118 |
actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41650297 |
actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca |
41650198 |
T |
|
| Q |
218 |
cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41650197 |
cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact |
41650130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 285
Target Start/End: Original strand, 43227769 - 43228029
Alignment:
| Q |
25 |
tcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaacactca-g |
123 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||| || || |||| |||||||||| | |
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| T |
43227769 |
tcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaaccaagataaaa-tccacaactgaaaactaaaacactcaag |
43227867 |
T |
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| Q |
124 |
gaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtc |
223 |
Q |
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||||||| | || ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43227868 |
gaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgta |
43227967 |
T |
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| Q |
224 |
actgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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||||||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||| |
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| T |
43227968 |
actgcaactggatgtttatattgaacacccaactcatccaattttgttcttataagcttact |
43228029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 108 - 285
Target Start/End: Original strand, 43224056 - 43224228
Alignment:
| Q |
108 |
aaaccaaaacactcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgta |
207 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
43224056 |
aaaccaaaacactcag-aaaaaatgtagac----ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgta |
43224150 |
T |
|
| Q |
208 |
accaataacacctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||||| |
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| T |
43224151 |
accaataacacctgtcactgcaactggatgtttatattgaacacctaattcatccaattctgttcttataagcttact |
43224228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 41654816 - 41654670
Alignment:
| Q |
139 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
238 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654816 |
tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41654717 |
T |
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| Q |
239 |
ttatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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||||||| ||||| ||||||||||||||||||| |||||||||||| |
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| T |
41654716 |
ttatatgtaacacccaattcatccaattttgttcttataagcttact |
41654670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 139 - 285
Target Start/End: Original strand, 43213347 - 43213493
Alignment:
| Q |
139 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
238 |
Q |
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|
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43213347 |
tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt |
43213446 |
T |
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| Q |
239 |
ttatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
43213447 |
ttatatgggacacctaattcatctaattttgttcttataagcttact |
43213493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 43206374 - 43206519
Alignment:
| Q |
140 |
acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
239 |
Q |
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||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
|
| Q |
240 |
tatatgggacacctaattcatccaattttgttcgtataagcttact |
285 |
Q |
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||||| | ||||| || |||||||||||||||| |||||||||||| |
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| T |
43206474 |
tatattgaacacccaactcatccaattttgttcttataagcttact |
43206519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
| Q |
151 |
aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata |
243 |
Q |
| |
|
||||||||||||||||||||| | ||| |||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| |||||| |
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| T |
5073627 |
aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata |
5073719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 13267942 - 13267906
Alignment:
| Q |
39 |
agaaaattctcttgaaaacttcatttaaaacatgtta |
75 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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| T |
13267942 |
agaaaattcctttgaaaacttcatttaaaacatgtta |
13267906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:
Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 8979 - 8943
Alignment:
| Q |
39 |
agaaaattctcttgaaaacttcatttaaaacatgtta |
75 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
8979 |
agaaaattttcttgaaaacttcatttaaaacatgtta |
8943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 41666250 - 41666286
Alignment:
| Q |
39 |
agaaaattctcttgaaaacttcatttaaaacatgtta |
75 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
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| T |
41666250 |
agaaaattttcttgaaaacttcatttaaaacatgtta |
41666286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 43365948 - 43365909
Alignment:
| Q |
39 |
agaaaattctcttgaaaacttcatttaaaacatgttacat |
78 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
43365948 |
agaaaattcccttaaaaacttcatttaaaacatgttacat |
43365909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 49888328 - 49888358
Alignment:
| Q |
41 |
aaaattctcttgaaaacttcatttaaaacat |
71 |
Q |
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|
||||||||||||||||||||||||||||||| |
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|
| T |
49888328 |
aaaattctcttgaaaacttcatttaaaacat |
49888358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 25189569 - 25189514
Alignment:
| Q |
16 |
agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacat |
71 |
Q |
| |
|
|||||||| | |||||| |||| | |||||||||||||||||||||||||||||| |
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|
| T |
25189569 |
agatgaacattgataaaattgtaacgaaattctcttgaaaacttcatttaaaacat |
25189514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 39450803 - 39450832
Alignment:
| Q |
42 |
aaattctcttgaaaacttcatttaaaacat |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39450803 |
aaattctcttgaaaacttcatttaaaacat |
39450832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 37327454 - 37327506
Alignment:
| Q |
16 |
agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaa |
68 |
Q |
| |
|
|||| ||| |||||||| ||| | |||||||||||||||||||||||||||| |
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|
| T |
37327454 |
agattaacatcgataaaattgcaacaaaattctcttgaaaacttcatttaaaa |
37327506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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