View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_17 (Length: 270)

Name: NF17394_low_17
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_17
NF17394_low_17
[»] chr7 (3 HSPs)
chr7 (23-253)||(7625523-7625750)
chr7 (115-159)||(43434513-43434557)
chr7 (1-31)||(42584592-42584622)
[»] chr1 (2 HSPs)
chr1 (115-180)||(3497245-3497310)
chr1 (1-31)||(8462271-8462301)
[»] chr6 (1 HSPs)
chr6 (115-158)||(7250979-7251022)
[»] chr4 (3 HSPs)
chr4 (1-32)||(23237261-23237292)
chr4 (113-149)||(23817983-23818019)
chr4 (1-29)||(45250065-45250093)
[»] chr5 (2 HSPs)
chr5 (1-30)||(35189436-35189465)
chr5 (1-29)||(25538301-25538329)
[»] chr3 (1 HSPs)
chr3 (1-30)||(49102694-49102723)
[»] chr8 (2 HSPs)
chr8 (1-29)||(30597040-30597068)
chr8 (1-29)||(37954429-37954457)
[»] chr2 (1 HSPs)
chr2 (1-29)||(38448373-38448401)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 7625750 - 7625523
Alignment:
Q  23 tagtatatatggcacttctatacataaaacttggtatatatgacactgacgcatacgattacannnnnnngtgtgaattagaatttataattattatatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||       |||||||||| |||||||||| ||||||||    
T  7625750 tagtatatatggcacttctatacataaaacttggtatatatgacagtgacgcatgcaattacattttt--gtgtgaattataatttataat-attatatt 7625654  T
Q  123 caataactttcattttctaaaattattatcggtgtctttgtatctgtgtcaatatcgtatctggtattcgtgtctgtgctatcttttgggactttacttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  7625653 caataactttcattttctaaaattattatcggtgtctttgtatctgtgtcaatatcgtatctggtgttcatgtctgtgctatcttttgggactttacttg 7625554  T
Q  223 tactacaagtagaattggactccttttgttg 253  Q
    |||||||||||||||||||||||||||||||    
T  7625553 tactacaagtagaattggactccttttgttg 7625523  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 43434557 - 43434513
Alignment:
Q  115 attatattcaataactttcattttctaaaattattatcggtgtct 159  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  43434557 attatattcaatcactttcattttcttaaattattatcggtgtct 43434513  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 42584592 - 42584622
Alignment:
Q  1 atacaatttgggacggagggagtagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  42584592 atacaatttgggacggagggagtagtatata 42584622  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 3497245 - 3497310
Alignment:
Q  115 attatattcaataactttcattttctaaaattattatcggtgtctttgtatctgtgtcaatatcgt 180  Q
    |||||||||||| ||||||||| | |||||||||||| ||||||| ||||||  ||||| ||||||    
T  3497245 attatattcaatcactttcattatttaaaattattattggtgtctatgtatcaatgtcagtatcgt 3497310  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 8462301 - 8462271
Alignment:
Q  1 atacaatttgggacggagggagtagtatata 31  Q
    |||||||||||||||||||||||||||||||    
T  8462301 atacaatttgggacggagggagtagtatata 8462271  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 7250979 - 7251022
Alignment:
Q  115 attatattcaataactttcattttctaaaattattatcggtgtc 158  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||    
T  7250979 attatattcaattactttcattttctcaaattattattggtgtc 7251022  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23237261 - 23237292
Alignment:
Q  1 atacaatttgggacggagggagtagtatatat 32  Q
    ||||||||||||||||||||||||||||||||    
T  23237261 atacaatttgggacggagggagtagtatatat 23237292  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 23817983 - 23818019
Alignment:
Q  113 ttattatattcaataactttcattttctaaaattatt 149  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  23817983 ttattatattcaatcactttcattttcttaaattatt 23818019  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45250093 - 45250065
Alignment:
Q  1 atacaatttgggacggagggagtagtata 29  Q
    |||||||||||||||||||||||||||||    
T  45250093 atacaatttgggacggagggagtagtata 45250065  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 35189436 - 35189465
Alignment:
Q  1 atacaatttgggacggagggagtagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  35189436 atacaatttgggacggagggagtagtatat 35189465  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25538301 - 25538329
Alignment:
Q  1 atacaatttgggacggagggagtagtata 29  Q
    |||||||||||||||||||||||||||||    
T  25538301 atacaatttgggacggagggagtagtata 25538329  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 49102694 - 49102723
Alignment:
Q  1 atacaatttgggacggagggagtagtatat 30  Q
    ||||||||||||||||||||||||||||||    
T  49102694 atacaatttgggacggagggagtagtatat 49102723  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 30597068 - 30597040
Alignment:
Q  1 atacaatttgggacggagggagtagtata 29  Q
    |||||||||||||||||||||||||||||    
T  30597068 atacaatttgggacggagggagtagtata 30597040  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 37954429 - 37954457
Alignment:
Q  1 atacaatttgggacggagggagtagtata 29  Q
    |||||||||||||||||||||||||||||    
T  37954429 atacaatttgggacggagggagtagtata 37954457  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 38448373 - 38448401
Alignment:
Q  1 atacaatttgggacggagggagtagtata 29  Q
    |||||||||||||||||||||||||||||    
T  38448373 atacaatttgggacggagggagtagtata 38448401  T

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