View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_19 (Length: 265)
Name: NF17394_low_19
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 40810017 - 40810203
Alignment:
| Q |
1 |
tgagcgaaggttagtgtttgagaagaatcggcatctataagagcggttttgtttggggaagaagtgactttgttgaagaggtgtgttacgagagagaggt |
100 |
Q |
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| T |
40810017 |
tgagcgaaggttagtgtttgagaagaatcggcatctataagagcggttttgtttggggaagaagtgactttgttgaagaggtgtgttacgagagagaggt |
40810116 |
T |
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| Q |
101 |
ttggattttttggtaagataagggaaggtcttaaggacctgtatattccatctgaaccgtaacctgatttctgcattggaaaagtac |
187 |
Q |
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| T |
40810117 |
ttggattttttggtaagataagggaaggtcttaaggacctgtatattccatctgaaccgtaacctgatttctgcattggaaaagtac |
40810203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 40810238 - 40810273
Alignment:
| Q |
222 |
aacaaacagagattttctagtgctttggtgatgatg |
257 |
Q |
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| T |
40810238 |
aacaaacagggattttctagtgctttggtgatgatg |
40810273 |
T |
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