View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_2 (Length: 748)

Name: NF17394_low_2
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_2
NF17394_low_2
[»] chr3 (10 HSPs)
chr3 (66-399)||(21076764-21077097)
chr3 (66-400)||(21022832-21023175)
chr3 (595-732)||(21077095-21077226)
chr3 (536-640)||(21024397-21024495)
chr3 (11-68)||(21076619-21076676)
chr3 (465-538)||(21024301-21024374)
chr3 (395-460)||(21023464-21023529)
chr3 (23-68)||(21022699-21022744)
chr3 (642-683)||(21024938-21024979)
chr3 (246-289)||(21806760-21806803)
[»] chr5 (1 HSPs)
chr5 (230-317)||(33699737-33699824)
[»] chr8 (3 HSPs)
chr8 (231-289)||(260701-260759)
chr8 (231-289)||(655162-655220)
chr8 (231-289)||(840897-840955)
[»] chr1 (1 HSPs)
chr1 (259-316)||(25427493-25427550)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 66 - 399
Target Start/End: Original strand, 21076764 - 21077097
Alignment:
Q  66 ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagcatttaaaggtggtctttgtaagattgtcaaaacgttcacaatta 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  21076764 ccctttgtgttttgaacatagcatgatgtgtttacaaccatatagcgaaatatagcgtttaaaggtggtctttgtaagattgtgaaatcgttcacaatta 21076863  T
Q  166 agctgattatagctaaagtctgaagaagctttccaaaacatgtatggtcaggtagatnnnnnnntaagagaaattgtgcggaatctgagaggatatctca 265  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||        |||||||||||||||||||| ||||||| ||| |||    
T  21076864 agctgaatatagctaaagtttgaagaagctttccaaaacatgtatggccaggtagacaaaaaaataagagaaattgtgcggaatttgagagggtatttca 21076963  T
Q  266 gacaccatattgaaaaatctcacagttagtggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatcaattagccaaatgcagg 365  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||      
T  21076964 gacaccatattgaaaaatctcacagttaatggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatcaattaactaaatgcaaa 21077063  T
Q  366 aaatacttaaatggattgggacacaacttctaag 399  Q
    ||||||||||||||||||||||||||||||||||    
T  21077064 aaatacttaaatggattgggacacaacttctaag 21077097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 66 - 400
Target Start/End: Original strand, 21022832 - 21023175
Alignment:
Q  66 ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagcatttaaaggtggtctttgtaagattgtcaaaacgttcacaatta 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||| |||||||    
T  21022832 ccctttgtgttttgaacatagcatgatgtgtttacaaccatataacgaaatatagggtttaaaggttgtctttgtaagattgtcaaatcgttaacaatta 21022931  T
Q  166 agctgattatagctaaagtctg-aagaagctttccaaaacatgtatggtcaggtag-----atnnnnnnntaagagaaattgtgcggaatctgagaggat 259  Q
    || |||||||||||||| |||| ||||||||||||||||||||||||| ||| |||     |         |||||||||||||| |||| ||||||  |    
T  21022932 agttgattatagctaaattctgaaagaagctttccaaaacatgtatggccagatagacaaaaaaaaaaaaaaagagaaattgtgcagaatttgagagagt 21023031  T
Q  260 atctcagacaccatattgaaaaatctcacagt---tagtggaaactgtactagcccagttaaataaaacttaagttcctatcctgatcaatcaattagcc 356  Q
    ||||||| |||| ||||| |||||||||||||   ||| ||  |||||||||||||||||||||||||||||||||   | || |||||||||||||||     
T  21023032 atctcaggcaccttattggaaaatctcacagtgagtaggggggactgtactagcccagttaaataaaacttaagttttaaacccgatcaatcaattagct 21023131  T
Q  357 aaatgcaggaaatacttaaatggattgggacacaacttctaagt 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  21023132 aaatgcaggaaatacttaaatggattggggcacaacttctaagt 21023175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 595 - 732
Target Start/End: Original strand, 21077095 - 21077226
Alignment:
Q  595 aagattaattttgttatgcatgcatgtttgaactcaatgcatataacaaaattgggctacttcccaataaaaatttatttatgttattaaatgaacacca 694  Q
    ||||||||||||||||||||||    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21077095 aagattaattttgttatgcatg----tttgaactcaatgcata--acaaaattgggctacttcccaataaaaatttatttatgttattaaaagaacacca 21077188  T
Q  695 atttcaaaccgttagcnnnnnnntttagggaaactaac 732  Q
    ||||||||||||||||       |||||||||||||||    
T  21077189 atttcaaaccgttagcaaaaaattttagggaaactaac 21077226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 536 - 640
Target Start/End: Original strand, 21024397 - 21024495
Alignment:
Q  536 acactaattatttacaagttgatttcaaaaactttccacaaattagatatggtgatagaaagattaattttgttatgcatgcatgtttgaactcaatgca 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||     ||| ||||||||||| ||||||    
T  21024397 acactaattatttacaagttgatttcaaaaactttccacaaattagatatggtaatag-aagataaattttgt-----atggatgtttgaacttaatgca 21024490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 21076619 - 21076676
Alignment:
Q  11 catcatcatgggaataatgtatcctaacaataacttagattattgtaagctctgtccc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21076619 catcatcatgggaataatgtatcctaacaataacttagattattgtaagctctgtccc 21076676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 21024301 - 21024374
Alignment:
Q  465 cttctacctgttctatcatgcatcaagctacttcaaatcacaacatattattggacaatgcatgcatgtgaaca 538  Q
    ||||||| |||| ||||||||||||| |||||| ||||||||| |||||| ||||||||||||| |||||||||    
T  21024301 cttctacatgttatatcatgcatcaaactacttaaaatcacaaaatattactggacaatgcatggatgtgaaca 21024374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 21023464 - 21023529
Alignment:
Q  395 ctaagtcccacttccctctaatagcttgttttgattatgcacacaggttatcattagggtaacaaa 460  Q
    ||||| |||||||||| | | ||||||||||||| |||||||| ||||||||||||||||||||||    
T  21023464 ctaagccccacttccccccagtagcttgttttgagtatgcacataggttatcattagggtaacaaa 21023529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21022699 - 21022744
Alignment:
Q  23 aataatgtatcctaacaataacttagattattgtaagctctgtccc 68  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  21022699 aataatgtatcctagcaataacttagattactgtaagctctgtccc 21022744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 642 - 683
Target Start/End: Original strand, 21024938 - 21024979
Alignment:
Q  642 aaaattgggctacttcccaataaaaatttatttatgttatta 683  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  21024938 aaaattgggctacctcccaataaaaatgtatttatgttatta 21024979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 21806760 - 21806803
Alignment:
Q  246 gaatctgagaggatatctcagacaccatattgaaaaatctcaca 289  Q
    |||||| |||||||||||||||||||||||| |||||| |||||    
T  21806760 gaatctaagaggatatctcagacaccatattaaaaaatatcaca 21806803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 33699824 - 33699737
Alignment:
Q  230 taagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtta 317  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||  |||||||| |||||    
T  33699824 taagagaaagtgtgcagaatctgagagggtatctcagacaccatattggaaaatctcacagttagtggagaccatactagcctagtta 33699737  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 260701 - 260759
Alignment:
Q  231 aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca 289  Q
    |||||||| ||||  |||||||||||| ||||||| ||||||||||| |||||||||||    
T  260701 aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca 260759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 655220 - 655162
Alignment:
Q  231 aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca 289  Q
    |||||||| ||||  |||||||||||| ||||||| ||||||||||| |||||||||||    
T  655220 aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca 655162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 840955 - 840897
Alignment:
Q  231 aagagaaattgtgcggaatctgagaggatatctcagacaccatattgaaaaatctcaca 289  Q
    |||||||| ||||  |||||||||||| ||||||| ||||||||||| |||||||||||    
T  840955 aagagaaaatgtgaagaatctgagagggtatctcatacaccatattggaaaatctcaca 840897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 25427550 - 25427493
Alignment:
Q  259 tatctcagacaccatattgaaaaatctcacagttagtggaaactgtactagcccagtt 316  Q
    |||||||  ||||| |||||||||||||| ||| |||||| |||| ||||||||||||    
T  25427550 tatctcaagcaccagattgaaaaatctcaaagtcagtggagactggactagcccagtt 25427493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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