View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_20 (Length: 251)

Name: NF17394_low_20

Description: NF17394

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17394_low_20

[»] chr3 (4 HSPs)

[»] scaffold0836 (1 HSPs)

Alignment Details

Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 227; E-Value: 1e-125

Query Start/End: Original strand, 10 - 251

Target Start/End: Original strand, 18029155 - 18029399

Alignment:

Q	10	attattctgcttaataatattgttttttctcatactaacaaatatctctacatcaataccaatattcttcccgtaagattaatagtttcagaaacattaa	109	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029155	attactctgcttaataatattgttttttctcatactaacaaatatctctacatcaataccaatattcttcccgtaagattaatagtttcagaaacattaa	18029254	T

Q	110	taaaaatatatagaaag---ggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaag	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029255	taaaaatatatagaaagaaaggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaag	18029354	T

Q	207	gtggaaacgtcgtgcgatagtttttggtacacatgccagttaaac	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18029355	gtggaaacgtcgtgcgatagtttttggtacacatgccagttaaac	18029399	T

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Target: chr3; HSP #2

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 83 - 212

Target Start/End: Original strand, 27395996 - 27396128

Alignment:

Q	83	taagattaatagtttcagaaacattaataaaaatatatagaaag---ggtggataccttgacaaagaaatcaccaatagatttaatatcaaactgggtgc	179	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|
T	27395996	taagattactagtttcacaaacattaatgaaaatatatggaaagatgggtgggtaccttgacaatcaaatcaccaatatatttaagaacaagctggctgc	27396095	T

Q	180	aattaatgagttcaagtaccgccaaaggtggaa	212	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|
T	27396096	aattgatgagttcaagttccaccaaagctggaa	27396128	T

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Target: chr3; HSP #3

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 87 - 125

Target Start/End: Original strand, 18079648 - 18079686

Alignment:

Q	87	attaatagtttcagaaacattaataaaaatatatagaaa	125	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18079648	attaataatttcacaaacattaataaaaatatatagaaa	18079686	T

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Target: chr3; HSP #4

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 145 - 243

Target Start/End: Original strand, 18079745 - 18079843

Alignment:

Q	145	gaaatcaccaatagatttaatatcaaactgggtgcaattaatgagttcaagtaccgccaaaggtggaaacgtcgtgcgatagtttttggtacacatgcc	243	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18079745	gaaattaccaataggtttaatatcaaccacgaagcaatcatcgagtttaagtaccgccgaaggtggaaatgttgtgcgataacgtttggtacacatgcc	18079843	T

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Target: scaffold0836 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: scaffold0836

Description:

Target: scaffold0836; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 202 - 242

Target Start/End: Original strand, 937 - 977

Alignment:

Q	202	caaaggtggaaacgtcgtgcgatagtttttggtacacatgc	242	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	937	caaaggtggcaacgttgtgcgatagtgtttggtacacatgc	977	T

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