View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_21 (Length: 249)
Name: NF17394_low_21
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 48997759 - 48997544
Alignment:
| Q |
16 |
atgaacaattgggaaatcttaacgttgcaaagggtgttggtcattatcatctttcatttaaacagaacaaggactacacattgccaatttctgtttgctg |
115 |
Q |
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| T |
48997759 |
atgaacaattgggaaatcttaacgttgcaaagggtgttggtcattatcatctttcatttaaacagaacaaggactacacattgccaatttctgtttgctg |
48997660 |
T |
|
| Q |
116 |
attccatgtgttgtggttttaatgaatcttcagattagcagagtagatgtaattttttaatcatttgcaatgaggttgtgggatgttaaatcctttaatt |
215 |
Q |
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| T |
48997659 |
attccatgtgttgt-gttttaatgaatcttcagattagcagagtagatgtaattttttaatcatttgcaatgaggttgtgggatgttaaatcctttaatt |
48997561 |
T |
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| Q |
216 |
atgttaggtaagtactg |
232 |
Q |
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| T |
48997560 |
atgttaggtaagtactg |
48997544 |
T |
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