View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_22 (Length: 245)
Name: NF17394_low_22
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 9973824 - 9973676
Alignment:
| Q |
72 |
tataatcgatattttattaaaattaaaatataatcaatgaaagaaatttactaaccttttctttcagccagtcattttcctgtctcatcttttgcttgta |
171 |
Q |
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| T |
9973824 |
tataatcgatattttattaaaattaaaatataatcaatgaaagaaatttactaaccttttctttcagccagtcattttcctgtctcatcttttgcttgta |
9973725 |
T |
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| Q |
172 |
aagttaatgctcttgtattgggaaatgaggacccccacaagttttcaga |
220 |
Q |
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| T |
9973724 |
aagttaatgctcttgtattgggaaaggaggacccccacaagttttcaga |
9973676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 9952270 - 9952408
Alignment:
| Q |
72 |
tataatcgatattttattaaaattaaaatataatcaatgaaagaaatttactaaccttttctttcagccagtcattttcctgtctcatcttttgcttgta |
171 |
Q |
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| T |
9952270 |
tataattgatattttattaaaataaaaatataatcaatgaaagaaatttactaaccttttctttcagccaatcgttttcctgtctcatcttttgcttgta |
9952369 |
T |
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| Q |
172 |
aagttaatgctcttgtattgggaaatgaggacccccaca |
210 |
Q |
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| T |
9952370 |
aagttaatgctattatatttggaaaggagaacccccaca |
9952408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 9872936 - 9873049
Alignment:
| Q |
80 |
atattttattaaaattaaaatataatcaatgaaagaaatttactaaccttttctttcagccagtcattttcctgtctcatcttttgcttgtaaagttaat |
179 |
Q |
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| T |
9872936 |
atatttaattaaaattaaattatcatcagcgaaagaagtttactaaccttttctttcagcctagaattctcctttctcatcgttttcatgtgaagttcat |
9873035 |
T |
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| Q |
180 |
gctcttgtattggg |
193 |
Q |
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| T |
9873036 |
gctcttgtattggg |
9873049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 9885862 - 9885971
Alignment:
| Q |
87 |
attaaaattaaaatataatcaatgaaagaaatttactaaccttttctttcagccagtcattttcctgtctcatcttttgcttgtaaagttaatgctcttg |
186 |
Q |
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| T |
9885862 |
attaaaattaaaatatcatcaacgaaagaaacttagtaaccttttctttcagcctaacattcccctttctcatcgtttgtatgtgaaattcatgctcttg |
9885961 |
T |
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| Q |
187 |
tattgggaaa |
196 |
Q |
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|||||||||| |
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| T |
9885962 |
tattgggaaa |
9885971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 9872756 - 9872701
Alignment:
| Q |
80 |
atattttattaaaattaaaatataatcaatgaaagaaatttactaaccttttcttt |
135 |
Q |
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| T |
9872756 |
atatttgattaaaattacaatataatcaatgaaagaagttcattaaccttttcttt |
9872701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 9885672 - 9885633
Alignment:
| Q |
80 |
atattttattaaaattaaaatataatcaatgaaagaaatt |
119 |
Q |
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| T |
9885672 |
atatttgattaaaattaaaatataatcaatgaaagaaatt |
9885633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 9973887 - 9973854
Alignment:
| Q |
14 |
ttaactagtgagaggttggccggtgaggattgtc |
47 |
Q |
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| T |
9973887 |
ttaactagtgagaggttggccggtgaggattgtc |
9973854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 9874074 - 9874121
Alignment:
| Q |
93 |
attaaaatataatcaatgaaagaaatttactaaccttttctttcagcc |
140 |
Q |
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| T |
9874074 |
attaaaatatcatcaacgtaagaagtttactaaccttttctttcagcc |
9874121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 9308745 - 9308835
Alignment:
| Q |
121 |
actaaccttttctttcagccagtcattttcctgtctcatcttttgcttgtaaagttaatgctcttgtattgggaaatgaggacccccacaa |
211 |
Q |
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| T |
9308745 |
actaaccttctctttcagcatttcattctccattctcatcttttgcatgaaacgttcatgctcgtgcattgggaaagaaggacccccacaa |
9308835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 36733051 - 36733019
Alignment:
| Q |
213 |
ttttcagacgagtaatgatacatagacaccctt |
245 |
Q |
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| T |
36733051 |
ttttcagaagagtaatgatacatagacaccctt |
36733019 |
T |
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