View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_23 (Length: 242)
Name: NF17394_low_23
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 54848913 - 54848684
Alignment:
| Q |
1 |
tttgaccacattatgccattttatacgaatgatccaaacaaatagatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatgg |
100 |
Q |
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| T |
54848913 |
tttgaccacattatgccattttatacgaatgatccaaacaaagagatgagtcaattcatgatgtcaaaatatagaataataaacatatgagcatatatgg |
54848814 |
T |
|
| Q |
101 |
aagnnnnnnnnttgaatcaatgatcaacgggtcaaatgataaaaatctcttataaatttaataggtagtctcaagttcaaatatatagaaatcttacaat |
200 |
Q |
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| T |
54848813 |
aagaaaaaaaattgaatcaatgatcaacgggtcaaatgattaaaatctcttataaatttaataggtagtctcaagttcaa----agagaaatcttacaat |
54848718 |
T |
|
| Q |
201 |
tattgaatcaagatagcatcacataggtgaagat |
234 |
Q |
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||||||||| |||||||||||||| || |||||| |
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| T |
54848717 |
tattgaatcgagatagcatcacattggcgaagat |
54848684 |
T |
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