View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17394_low_4 (Length: 521)
Name: NF17394_low_4
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Complemental strand, 34674038 - 34673548
Alignment:
| Q |
12 |
atcatcaagtcaatctaattaagaaatagagtaaaatttgtgaggtaagtcgcaccaaactttgtaaacaacaaaattattgtgaaacctcacaaacaag |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34674038 |
atcatcaagtcaatctaattaagaaattgagtaaaatttgtcaggtaagtcgcaccaaactttgtaaacaacaaaattattgtgaaacctcacaaacaag |
34673939 |
T |
|
| Q |
112 |
tgtaatttcacatgcatacaataacctcatctaataaattaggagtaactaatgaaatttaagacagaaaggaatataa-tataagagcgacatctagca |
210 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34673938 |
tgtaatttcacatgcacacaataac-tcatctaataaattaggagtaactaatgaaatttaagacagaaaggaatataaatataagagcgacatctagca |
34673840 |
T |
|
| Q |
211 |
ttttccataatatctcatatcccatcatatgcatgcataaggcgcctagttttttagttgaacctacttttgaatggatcaacatgagactgagattggt |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34673839 |
tttttcataatatctcatatcccatcatatgcat----aaggcgcctagttttttagttgaacctaattttgaatggatcaacatgagactgagattggt |
34673744 |
T |
|
| Q |
311 |
agtgttggtaacatattctcaaacatatatttctaaatatactatattctattgattgaaatttaaatcggattcattaaatttaatgatacaactcagc |
410 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673743 |
agtgttagtaacatattctcaaacatacatttctaaatatactacattctattgattgaaatttaaatcggattcattaaatttaatgatacaactcagc |
34673644 |
T |
|
| Q |
411 |
aacgagccaacgacgaacccaaatattgtaaatattacacgcaatgcatatataaatttatatcaataaatacataagtagtcaaataatatttta |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34673643 |
aacgagccaacgacgaacccaaatattgtgagtattacactcaatgcatatataaatttatatcaataaatacataagtagtcaaataatatttta |
34673548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University