View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_5 (Length: 368)

Name: NF17394_low_5
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_5
NF17394_low_5
[»] chr6 (7 HSPs)
chr6 (1-362)||(16579291-16579652)
chr6 (1-362)||(16615728-16616089)
chr6 (1-315)||(16872657-16872971)
chr6 (78-308)||(16570751-16570976)
chr6 (126-362)||(17040306-17040543)
chr6 (3-77)||(16571001-16571073)
chr6 (324-362)||(16570711-16570749)
[»] chr2 (2 HSPs)
chr2 (1-362)||(32790761-32791121)
chr2 (6-242)||(236520-236749)
[»] chr7 (1 HSPs)
chr7 (2-124)||(48300942-48301061)
[»] chr1 (1 HSPs)
chr1 (6-225)||(7389072-7389285)
[»] scaffold0256 (2 HSPs)
scaffold0256 (5-100)||(15005-15100)
scaffold0256 (3-62)||(12633-12692)


Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 16579652 - 16579291
Alignment:
Q  1 acatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16579652 acatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 16579553  T
Q  101 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16579552 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 16579453  T
Q  201 acaagccatttgaacttcttgttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||    
T  16579452 acaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtcctcg 16579353  T
Q  301 ccgtaactcccaggatccctgcacttgttgatcaagtcctcatactgcttattattattctt 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16579352 ccgtaactctcaggatccctgcacttgttgatcaagtcctcatactgcttattattattctt 16579291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 16615728 - 16616089
Alignment:
Q  1 acatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16615728 acatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 16615827  T
Q  101 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16615828 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 16615927  T
Q  201 acaagccatttgaacttcttgttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| || ||||||||||    
T  16615928 acaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtcctcg 16616027  T
Q  301 ccgtaactcccaggatccctgcacttgttgatcaagtcctcatactgcttattattattctt 362  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16616028 ccgtaactctcaggatccctgcacttgttgatcaagtcctcatactgcttattattattctt 16616089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 16872971 - 16872657
Alignment:
Q  1 acatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872971 acatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 16872872  T
Q  101 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16872871 ttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcaattttcttccttcccctaactgcc 16872772  T
Q  201 acaagccatttgaacttcttgttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16872771 acaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatcagcatcgataatatcttcaatgctgtcatattctttgttagagtcctcg 16872672  T
Q  301 ccgtaactcccagga 315  Q
    |||||||||||||||    
T  16872671 ccgtaactcccagga 16872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 78 - 308
Target Start/End: Complemental strand, 16570976 - 16570751
Alignment:
Q  78 gcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcag 177  Q
    ||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |||||||||    || |||||||||||||||||| |||    
T  16570976 gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccag 16570881  T
Q  178 ttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgt 277  Q
    |||| ||||||| |||| | ||||||||   |||||||||||||||||| | | ||||||||||| ||||||||| |||||||||| |  |||  ||| |    
T  16570880 ttttattccttctcctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcgataatcttatcatggctct 16570782  T
Q  278 catattctttgttagagtcctcgccgtaact 308  Q
     ||||||||||| ||||||||||||||||||    
T  16570781 aatattctttgtcagagtcctcgccgtaact 16570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 362
Target Start/End: Original strand, 17040306 - 17040543
Alignment:
Q  126 agccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaa 225  Q
    ||||||||| | | |||||||||| |||  |||||||| |||| |||| ||| |||||||||||||||| | |||||||||  ||||||||||||||| |    
T  17040306 agccaatttagctaggtaggtaagctgt--tcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttcttgtt-a 17040402  T
Q  226 acaatttcccatgtgatagatggatcaacatcgataat---atcttcaatgctgtcatattctttgttagagtcctcgccgtaactcccagga---tccc 319  Q
    ||| | | ||||||||| || |||||| ||||||||||   ||| |  | ||| |||||||||| || | |||||   ||||||||| |||||   | ||    
T  17040403 acagtgtgccatgtgatcgacggatcagcatcgataatcgaatcgt--aagctctcatattcttcgtcaaagtccctaccgtaactctcaggattctgcc 17040500  T
Q  320 tgcacttgttgatcaagtcctcatactgcttattattattctt 362  Q
    |||||||||| ||||| |||||||||||| ||||||| |||||    
T  17040501 tgcacttgttaatcaaatcctcatactgcatattattcttctt 17040543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 16571073 - 16571001
Alignment:
Q  3 atattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactga 77  Q
    ||||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||||||||||||    
T  16571073 atattctgcacacattttttccacacat--ataagcacatgcccaccaacgaggcttgaattaacatcaaactga 16571001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 16570749 - 16570711
Alignment:
Q  324 cttgttgatcaagtcctcatactgcttattattattctt 362  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  16570749 cttgttaatcaagtcctcatactgcttattattattctt 16570711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 32791121 - 32790761
Alignment:
Q  1 acatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  32791121 acatattctgcacacattttttccacacatttataggcaaatgccccccaatgaggcttggattaacatcaaactgagcaaaaaccacactaaaaagaat 32791022  T
Q  101 ttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgcc 200  Q
    |||||||| ||||||||||||||| ||||||||||| | |||||||||| |||  |||||||||||||||||| ||||||| |||||||||||| |||||    
T  32791021 ttgcagcttttgtgcaggtgtttt-agccaattttgttaggtaggtaagctgt--tcaacttgttcaaaccttccagttttattccttcccctagctgcc 32790925  T
Q  201 acaagccatttgaacttcttgttaaacaatttcccatgtgatagatggatcaacatcgataatatcttcaatgctgtcatattctttgttagagtcctcg 300  Q
    ||||||  |||||||||||||||  ||| | ||||||||||| ||||||||| |||| |||||||| |||  ||| |||||||||| || ||||| |||     
T  32790924 acaagctctttgaacttcttgtt-cacagtatcccatgtgatcgatggatcagcatcaataatatcgtcatggctctcatattcttcgtcagagtgctca 32790826  T
Q  301 ccgtaactcccagga---tccctgcacttgttgatcaagtcctcatactgcttattattattctt 362  Q
    ||||||||| |||||   |||||||||||| | |||||  ||||||||||||||||||| |||||    
T  32790825 ccgtaactctcaggattttccctgcacttggtaatcaaaccctcatactgcttattattcttctt 32790761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 236520 - 236749
Alignment:
Q  6 ttctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaatttgca 105  Q
    ||||||||||| ||||||||||||||||| |||||||||||||   |||| | || |||||||||||||||||||||||||||||| |||||||||||||    
T  236520 ttctgcacacactttttccacacatttatgggcatatgcccac---tgagtcctggattaacatcaaactgagcagaaaccacactgaaaagaatttgca 236616  T
Q  106 gctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaag 205  Q
    |||  || ||||||||||| ||| | ||||| | || | |||||   || ||||| |||||||||||| |||||  |||||| |||||  || ||| ||     
T  236617 gcttctgagcaggtgtttt-agcaacttttgttaggaaagtaag--ctgctcaacctgttcaaaccttccagttcccttcctgcccctggcttccagaat 236713  T
Q  206 ccatttgaacttcttgttaaacaatttcccatgtgat 242  Q
    |  ||||||||||||||| |||| | |||||||||||    
T  236714 ctctttgaacttcttgtt-aacagtgtcccatgtgat 236749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 48300942 - 48301061
Alignment:
Q  2 catattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaatt 101  Q
    |||||||||||| || ||||||||||||||||| |||||||||||||   ||||||  | |||||||||||||||||||||||||||||| |||||||||    
T  48300942 catattctgcacgcactttttccacacatttatgggcatatgcccac---tgaggccaggattaacatcaaactgagcagaaaccacactgaaaagaatt 48301038  T
Q  102 tgcagctcttgtgcaggtgtttt 124  Q
    |||||||  ||||||||||||||    
T  48301039 tgcagcttctgtgcaggtgtttt 48301061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 7389285 - 7389072
Alignment:
Q  6 ttctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaatttgca 105  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||   |||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  7389285 ttctgcacacactttttccacacacttatgggcatatggccac---tgaggcctggattaacatcaaactgagcagaaaccacactgaaaagaatttgca 7389189  T
Q  106 gctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaag 205  Q
    |||  || ||||||||||| ||| | ||||| | || |||||||   || ||||| |||||||||||| |||||  |||||| |||||  || ||| ||     
T  7389188 gcttctgagcaggtgtttt-agcaacttttgttaggaaggtaag--ctgctcaacctgttcaaaccttccagttcccttcctgcccctggcttccagaat 7389092  T
Q  206 ccatttgaacttcttgttaa 225  Q
    |  |||||||||||||||||    
T  7389091 ctctttgaacttcttgttaa 7389072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 15005 - 15100
Alignment:
Q  5 attctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcagaaaccacactaaaaagaat 100  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||    
T  15005 attctgcacaaattttttccacatatttatatgcatatgcccaccaatgaggcttggattaacatcaaactgagcggaaaccactctgaaaagaat 15100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 12633 - 12692
Alignment:
Q  3 atattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaa 62  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12633 atattctgctcacattttttccacacatttataagcatatgcccaccaatgaggcttgaa 12692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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