View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_6 (Length: 363)
Name: NF17394_low_6
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 72 - 336
Target Start/End: Original strand, 53536203 - 53536467
Alignment:
| Q |
72 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53536203 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
53536302 |
T |
|
| Q |
172 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatctttctcgtcaggaaatttgttcaaatccaaaccattgtct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53536303 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatcttcctcgtcaggaaatttgttcaaatccaaaccattgtct |
53536402 |
T |
|
| Q |
272 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttctaagttgtcttcaacatcttc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53536403 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttccaagttgtcttcaacatcttc |
53536467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 72 - 347
Target Start/End: Original strand, 42918395 - 42918670
Alignment:
| Q |
72 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
171 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918395 |
gtttttgtctgatgtacggctcatattattgagaaagaatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
42918494 |
T |
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| Q |
172 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatctttctcgtcaggaaatttgttcaaatccaaaccattgtct |
271 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42918495 |
tggaagataaatcttgtgtaatttcttgtagtcctttttaatttcgtctgaactgtcatcttcctcgtcaggaaatttgttcaaatccaaaccattgtct |
42918594 |
T |
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| Q |
272 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttctaagttgtcttcaacatcttccaagttgtctt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42918595 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttctaagttgtcttcaacatcttccaagttgtctt |
42918670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 72 - 335
Target Start/End: Original strand, 23255280 - 23255543
Alignment:
| Q |
72 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23255280 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
23255379 |
T |
|
| Q |
172 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatctttctcgtcaggaaatttgttcaaatccaaaccattgtct |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23255380 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatcttcctcgtcaggaaatttgttcaaatccaaaccattgtct |
23255479 |
T |
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| Q |
272 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttctaagttgtcttcaacatctt |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23255480 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttccaagttgtcttcaacatctt |
23255543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 72 - 336
Target Start/End: Original strand, 4755929 - 4756193
Alignment:
| Q |
72 |
gtttttgtctgatgcacggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgataaaaaagacaacttttaataaaactt |
171 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4755929 |
gtttttgtctgatgcatggctcatattattgagaaaggatttccccttaaaaacaactcttattataagatgatgaaaaagacaacttttaataaaactt |
4756028 |
T |
|
| Q |
172 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatctttctcgtcaggaaatttgttcaaatccaaaccattgtct |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
4756029 |
tggaagataaatcttgcgtaatttcttgtactcctttttaatttcgtctgaactgtcatcttcctcgtcaggaaatttgttcaaatccaaaccattgtat |
4756128 |
T |
|
| Q |
272 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttctaagttgtcttcaacatcttc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4756129 |
tcagggatatttaaatcaatgtttaagttgtcttcaacatcttccaagttgtcttcaacatcttc |
4756193 |
T |
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