View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17394_low_7 (Length: 345)
Name: NF17394_low_7
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17394_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 29672179 - 29671863
Alignment:
| Q |
13 |
aagaatatgtatgctttgagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctccggacgttgagattc |
112 |
Q |
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| T |
29672179 |
aagaatatgtatgctttgagctatgacgtagttcaaaagccttatttgaaatactttcgttttgatgcgtccggagttaagtctccggacgttgagattc |
29672080 |
T |
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| Q |
113 |
cgttggagcagcctactatgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattgggtgaaatgatccg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29672079 |
cgttggagcagcctactatgatgcatgacttcgcgatcactgagaatttcgttgttgtgcctgatcaacaagttgtgtttaaattgggtgaaatgatccg |
29671980 |
T |
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| Q |
213 |
tggtgggtcgcctgttgtttacgataaggagaaagtctcgaggttcggggttttatcaaagaatgctgaagattcttctgagatgatttggattgatgca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671979 |
tggtgggtcgcctgttgtttacgataaggagaaagtctcgaggttcggggttttatccaagaatgctgaagattcttctgagatgatttggattgatgca |
29671880 |
T |
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| Q |
313 |
ccagagtgtttctgttt |
329 |
Q |
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||||||||||||||||| |
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| T |
29671879 |
ccagagtgtttctgttt |
29671863 |
T |
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