View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_8 (Length: 313)

Name: NF17394_low_8
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_8
NF17394_low_8
[»] chr3 (9 HSPs)
chr3 (1-313)||(18029400-18029712)
chr3 (1-285)||(27396118-27396402)
chr3 (85-267)||(18714008-18714199)
chr3 (10-260)||(18079917-18080164)
chr3 (168-267)||(27372662-27372761)
chr3 (46-142)||(28049213-28049309)
chr3 (85-155)||(27345886-27345956)
chr3 (270-310)||(27372779-27372819)
chr3 (46-142)||(27911066-27911162)
[»] scaffold0836 (3 HSPs)
scaffold0836 (108-267)||(4570-4732)
scaffold0836 (108-155)||(1169-1216)
scaffold0836 (168-267)||(1048-1147)
[»] scaffold1236 (1 HSPs)
scaffold1236 (85-267)||(1845-2036)
[»] scaffold0043 (2 HSPs)
scaffold0043 (204-267)||(70721-70784)
scaffold0043 (108-155)||(70842-70889)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 18029712 - 18029400
Alignment:
Q  1 atgtgcaaaattaaagtgataacactggtgaaccttccacggataaaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18029712 atgtgcaaaattaaagtgataacactggtgaaccttccacggataaaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactg 18029613  T
Q  101 ttgaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttga 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18029612 ttaaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttga 18029513  T
Q  201 aaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaatcctcatcttccagctttgaaatgtctcaagctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18029512 aaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaatcctcatcttccagctttgaaatgtctcaagctt 18029413  T
Q  301 tgcagactcccaa 313  Q
    |||||||||||||    
T  18029412 tgcagactcccaa 18029400  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 27396402 - 27396118
Alignment:
Q  1 atgtgcaaaattaaagtgataacactggtgaaccttccacggataaaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactg 100  Q
    |||||||| |||||||||||| |||||   |||||  ||  |||||| ||||||||| || ||||| |  ||||| ||||| ||||||||| |||||||     
T  27396402 atgtgcaatattaaagtgatatcactgagtaacctctcaaagataaagtcagtatttgtcctatctatgacttcaagaatgatgttggagagcttgacta 27396303  T
Q  101 ttgaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttga 200  Q
    ||||||  ||||||||||||||||| ||| ||||||||||||||||| |||||||||  ||||||| |||||||||| |||| |||  |||| | ||| |    
T  27396302 ttgaaaactgtgatgaattgaagcacatagtagtagacattggagatagcagtggcagtgacaatagtgtcttcccaaaattgaaaaggctcgaagttaa 27396203  T
Q  201 aaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaatcctcatcttccagctttg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27396202 aaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaaccacaatcttcatcttccagctttg 27396118  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 267
Target Start/End: Complemental strand, 18714199 - 18714008
Alignment:
Q  85 ttggagaccttgactgttgaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaat---------attgtcttcc 175  Q
    ||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||| | ||||||||||     |||||         | ||||||||    
T  18714199 ttggagaccttgactattgaaaattgtgatgaattggagcacataatagtagacattgaatatggcagtggtggaaacaattggggaaacaatgtcttcc 18714100  T
Q  176 cacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    || |||||||||||||| |||||||  |||||| |||||| ||||||||||||||||||||||||| ||||||| |||| || ||| |||||    
T  18714099 caaaattaaaagagctcgacgttgatgattgtgagaaattggaatacatatttgggcacattgatgctagtgatcatcaccacaaccacaat 18714008  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 18080164 - 18079917
Alignment:
Q  10 attaaagtgataacactggtgaaccttccacggataaaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactgttgaaagtt 109  Q
    ||||||||||| |||||||||||  || ||  ||||||||||||  |||| || ||| ||||  ||  | | |||| ||||| ||||||| ||  |||||    
T  18080164 attaaagtgatgacactggtgaatgtttcaaagataaaatcagtgcttattttgtctattgcaccaaaagtattgtgggagatcttgactattagaagtt 18080065  T
Q  110 gtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaatattgtcttcccacaattaaaagagctctacgttgaaaattgtgg 209  Q
    |||||||| || |||| || ||| ||||| |||||||| ||| |||    | ||||   ||||| ||| | |||||||||||| |||||||||||||||     
T  18080064 gtgatgaactggagcaaatcatattagacgttggagatagcattggtggaggcaat---gtctttccaaacttaaaagagctcaacgttgaaaattgtga 18079968  T
Q  210 gaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaa 260  Q
     ||| | ||||||||| |||| |||||| | | ||||||||||||||||||    
T  18079967 taaaatggaatacatagttggacacattaaagctagtgatgatcatcaaaa 18079917  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 267
Target Start/End: Original strand, 27372662 - 27372761
Alignment:
Q  168 tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    |||||||||| |||||||||| ||| | |||||| |||||  ||||||  |||||||||||||||||||||||| || |||| |||| |||||| |||||    
T  27372662 tgtcttcccaaaattaaaagatctcgaagttgaatattgtacgaaattgaaatacatatttgggcacattgatgctactgatcatcaccaaaaccacaat 27372761  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 28049213 - 28049309
Alignment:
Q  46 aaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactgtt-gaaagttgtgatgaattgaagcatataatagtagacattg 142  Q
    ||||||||||| ||| ||||| |||||||  |||||||||||||||||||||   || | ||| ||||||||||||||||| |||||| |||||||||    
T  28049213 aaatcagtattcatcctatctattgcttctagaatgttgttggagaccttgagaattagcaag-tgtgatgaattgaagcacataataatagacattg 28049309  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 27345886 - 27345956
Alignment:
Q  85 ttggagaccttgactgttgaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtgg 155  Q
    |||||| |||||||| ||  || ||||||||||||| |||| |||||||||||||||  ||||||||||||    
T  27345886 ttggagtccttgactattagaaattgtgatgaattggagcacataatagtagacattaaagatggcagtgg 27345956  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 27372779 - 27372819
Alignment:
Q  270 tcatcttccagctttgaaatgtctcaagctttgcagactcc 310  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  27372779 tcatcttccagctttgaaatgtctcaagcttcgtagactcc 27372819  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 27911066 - 27911162
Alignment:
Q  46 aaatcagtatttatcttatctgttgcttcaggaatgttgttggagaccttgactgtt-gaaagttgtgatgaattgaagcatataatagtagacattg 142  Q
    ||||||||||| ||| ||||  ||||| ||||||||||||||||||| |||||  || | ||| ||||| ||||||||||| || ||| |||||||||    
T  27911066 aaatcagtattcatcctatcgattgctccaggaatgttgttggagactttgacaattagtaag-tgtgacgaattgaagcacattataatagacattg 27911162  T

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Target: scaffold0836 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 4732 - 4570
Alignment:
Q  108 ttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaat---attgtcttcccacaattaaaagagctctacgttgaaaat 204  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||||||     | |||   | |||||||||| |||||||||||||| |||||||  ||    
T  4732 ttgtgatgaattggagcacataatagtagacattgaagatggcagtggtggaaataattggaatgtcttcccaaaattaaaagagctcaacgttgatcat 4633  T
Q  205 tgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    |||| |||||| ||||||||||||||||||||||||| || | || |||| |||||| |||||    
T  4632 tgtgagaaattggaatacatatttgggcacattgatgctactaatcatcaccaaaaccacaat 4570  T

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Target: scaffold0836; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 1216 - 1169
Alignment:
Q  108 ttgtgatgaattgaagcatataatagtagacattggagatggcagtgg 155  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1216 ttgtgatgaattggagcacataatagtagacattggagatggcagtgg 1169  T

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Target: scaffold0836; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 1147 - 1048
Alignment:
Q  168 tgtcttcccacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    |||||||||| ||||||||| |||| || |||   |||||| |||| | ||||||||||||||||||||||||| ||  ||| |||| |||||| |||||    
T  1147 tgtcttcccaaaattaaaagtgctccacattgcttattgtgagaaagtggaatacatatttgggcacattgatgctacagatcatcaccaaaaccacaat 1048  T

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Target: scaffold1236 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1236
Description:

Target: scaffold1236; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 267
Target Start/End: Original strand, 1845 - 2036
Alignment:
Q  85 ttggagaccttgactgttgaaagttgtgatgaattgaagcatataatagtagacattggagatggcagtggcaacgacaat---------attgtcttcc 175  Q
    |||||| |||||||| |||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||     |||||         | ||||||||    
T  1845 ttggagtccttgactattgaaaattgtgatgaattggagcacataatagtagacattgaagatggcagtggtggaaacaatcggggaaacaatgtcttcc 1944  T
Q  176 cacaattaaaagagctctacgttgaaaattgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    || |||||||| ||||| | |||||  |||||| |||||| ||||||||||||||||||||||||| || |||| ||||  ||||| |||||    
T  1945 caaaattaaaaaagctcaaagttgatgattgtgagaaattggaatacatatttgggcacattgatgctactgatcatcacaaaaaccacaat 2036  T

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Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 70784 - 70721
Alignment:
Q  204 ttgtgggaaattagaatacatatttgggcacattgatgatagtgatgatcatcaaaactacaat 267  Q
    ||||| |||||| ||||||||||||||||||||||||| || |||| |||| |||||| |||||    
T  70784 ttgtgagaaattggaatacatatttgggcacattgatgctactgatcatcaccaaaaccacaat 70721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 70889 - 70842
Alignment:
Q  108 ttgtgatgaattgaagcatataatagtagacattggagatggcagtgg 155  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||||||    
T  70889 ttgtgatgaattggagcacataatagtagacattgaagatggcagtgg 70842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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