View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17394_low_9 (Length: 311)

Name: NF17394_low_9
Description: NF17394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17394_low_9
NF17394_low_9
[»] chr6 (11 HSPs)
chr6 (146-295)||(9416245-9416394)
chr6 (18-105)||(9416505-9416591)
chr6 (168-248)||(32621543-32621623)
chr6 (168-248)||(18904294-18904374)
chr6 (205-248)||(361229-361272)
chr6 (165-238)||(20846072-20846145)
chr6 (172-249)||(31104915-31104991)
chr6 (195-248)||(32141997-32142050)
chr6 (170-246)||(492933-493009)
chr6 (168-248)||(3709888-3709968)
chr6 (168-216)||(7897111-7897159)
[»] chr3 (23 HSPs)
chr3 (168-248)||(25883949-25884029)
chr3 (168-248)||(23090282-23090362)
chr3 (170-264)||(31586978-31587073)
chr3 (176-242)||(9114048-9114114)
chr3 (170-248)||(17729022-17729100)
chr3 (170-248)||(19030251-19030329)
chr3 (170-248)||(23653178-23653255)
chr3 (161-230)||(43280090-43280159)
chr3 (168-248)||(27329893-27329973)
chr3 (168-248)||(51879124-51879204)
chr3 (161-248)||(24303412-24303498)
chr3 (161-248)||(49443385-49443471)
chr3 (170-248)||(30779528-30779606)
chr3 (170-248)||(34102572-34102650)
chr3 (170-248)||(39719966-39720044)
chr3 (170-248)||(41936368-41936446)
chr3 (170-248)||(47098763-47098841)
chr3 (162-216)||(50381734-50381788)
chr3 (170-248)||(53432698-53432776)
chr3 (164-249)||(26880202-26880286)
chr3 (183-248)||(41710627-41710692)
chr3 (168-248)||(15085645-15085725)
chr3 (161-229)||(19222566-19222634)
[»] chr8 (19 HSPs)
chr8 (162-248)||(2908053-2908138)
chr8 (162-242)||(13105114-13105194)
chr8 (162-248)||(13059138-13059224)
chr8 (170-242)||(27077064-27077136)
chr8 (168-248)||(34873115-34873195)
chr8 (168-248)||(36035140-36035220)
chr8 (177-248)||(5570932-5571003)
chr8 (170-249)||(31152979-31153058)
chr8 (177-248)||(39587585-39587656)
chr8 (177-248)||(44673609-44673680)
chr8 (198-248)||(3912125-3912175)
chr8 (170-248)||(5328528-5328606)
chr8 (162-248)||(12770391-12770476)
chr8 (170-248)||(34894400-34894478)
chr8 (158-248)||(43846954-43847043)
chr8 (162-203)||(19733103-19733144)
chr8 (183-248)||(21133051-21133116)
chr8 (167-248)||(33810668-33810749)
chr8 (205-242)||(38730522-38730559)
[»] chr7 (16 HSPs)
chr7 (168-248)||(47440771-47440851)
chr7 (177-249)||(35815876-35815948)
chr7 (174-248)||(43119393-43119467)
chr7 (161-229)||(41331059-41331127)
chr7 (168-248)||(46758271-46758351)
chr7 (164-239)||(28735196-28735271)
chr7 (170-248)||(21762853-21762931)
chr7 (170-240)||(24188501-24188571)
chr7 (170-248)||(30388468-30388546)
chr7 (168-242)||(46645738-46645812)
chr7 (161-230)||(27788291-27788360)
chr7 (161-230)||(27791447-27791516)
chr7 (162-242)||(29461782-29461862)
chr7 (170-246)||(9712161-9712237)
chr7 (168-248)||(13702054-13702134)
chr7 (170-246)||(16200590-16200666)
[»] chr5 (14 HSPs)
chr5 (168-248)||(6734700-6734779)
chr5 (177-248)||(3740992-3741063)
chr5 (170-240)||(7545367-7545437)
chr5 (170-244)||(8241081-8241155)
chr5 (168-248)||(3821382-3821462)
chr5 (170-249)||(16745112-16745191)
chr5 (177-248)||(25729401-25729472)
chr5 (162-241)||(39799998-39800077)
chr5 (170-248)||(15241427-15241505)
chr5 (170-248)||(41179764-41179842)
chr5 (168-205)||(12256519-12256556)
chr5 (195-248)||(13501366-13501419)
chr5 (168-241)||(23937901-23937974)
chr5 (161-229)||(37684526-37684594)
[»] chr1 (18 HSPs)
chr1 (162-242)||(41998371-41998451)
chr1 (161-247)||(23233973-23234059)
chr1 (170-246)||(35605586-35605662)
chr1 (161-248)||(23991226-23991312)
chr1 (195-248)||(27579435-27579488)
chr1 (184-248)||(5431000-5431064)
chr1 (168-248)||(18512536-18512616)
chr1 (161-248)||(34557285-34557372)
chr1 (162-242)||(42735904-42735984)
chr1 (168-248)||(50103890-50103970)
chr1 (177-248)||(18911889-18911960)
chr1 (170-244)||(1604189-1604263)
chr1 (170-248)||(9866145-9866223)
chr1 (170-248)||(21265687-21265765)
chr1 (170-244)||(33033157-33033231)
chr1 (170-239)||(50533099-50533167)
chr1 (162-242)||(2997624-2997704)
chr1 (161-229)||(45416158-45416226)
[»] chr4 (24 HSPs)
chr4 (162-248)||(33933700-33933786)
chr4 (195-249)||(54215817-54215871)
chr4 (188-244)||(31187505-31187561)
chr4 (162-248)||(41137881-41137967)
chr4 (162-247)||(43539835-43539920)
chr4 (164-244)||(624505-624585)
chr4 (161-249)||(2629601-2629688)
chr4 (168-248)||(36099144-36099224)
chr4 (161-248)||(11294800-11294886)
chr4 (161-248)||(51890819-51890905)
chr4 (170-248)||(40051653-40051731)
chr4 (170-248)||(42134418-42134496)
chr4 (170-244)||(47890726-47890800)
chr4 (170-248)||(47929276-47929354)
chr4 (183-248)||(13161791-13161855)
chr4 (170-242)||(2484025-2484097)
chr4 (177-249)||(7686222-7686294)
chr4 (170-246)||(11375852-11375928)
chr4 (170-246)||(13578428-13578504)
chr4 (168-248)||(23176683-23176762)
chr4 (172-244)||(23778790-23778862)
chr4 (164-248)||(32293133-32293216)
chr4 (161-216)||(42411475-42411531)
chr4 (164-248)||(42664006-42664089)
[»] chr2 (11 HSPs)
chr2 (168-248)||(5947895-5947975)
chr2 (162-229)||(23919457-23919524)
chr2 (170-248)||(17034766-17034844)
chr2 (170-248)||(17089274-17089352)
chr2 (162-216)||(23405219-23405273)
chr2 (206-249)||(44898442-44898485)
chr2 (162-248)||(20919633-20919718)
chr2 (170-248)||(33228894-33228972)
chr2 (165-229)||(3596276-3596340)
chr2 (177-249)||(11189966-11190038)
chr2 (195-247)||(20497157-20497209)
[»] scaffold0117 (1 HSPs)
scaffold0117 (170-249)||(18439-18518)
[»] scaffold0088 (1 HSPs)
scaffold0088 (170-248)||(10787-10865)
[»] scaffold0006 (1 HSPs)
scaffold0006 (170-244)||(59144-59217)
[»] scaffold0250 (1 HSPs)
scaffold0250 (162-246)||(15028-15111)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 9416394 - 9416245
Alignment:
Q  146 aacatgtgtcaatgacagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctag 245  Q
    |||||||||||||  |||||||||| ||||||||||| |||||| ||  |||||||| |  ||||||||||| |||||||||||||||||||||||||      
T  9416394 aacatgtgtcaatagcagggacaatacataatatatcgaggggttggagttcgaatcttgaacaccccactgctccacatttaaaatatgtgagctctga 9416295  T
Q  246 ccatactttaccaacaaaatattacaacatgttttggttttcaaaatatt 295  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  9416294 ccatacttgaccaacaaaatatttcaacatgttttggttttcaaaatatt 9416245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 9416591 - 9416505
Alignment:
Q  18 ccattgtcattatttcttgtccgaaaaaattacaaaatatattggatttgaacctaggtcatcacgttcaacctaacaaattttggta 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||    
T  9416591 ccattgtcattatttcttgtccgaaaaaattacaaaatatattggattcgaacctagatcatcacgttcaacttaac-aattttggta 9416505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 32621623 - 32621543
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| ||||||||| ||||||||||||  |||||||||||||| ||||||||| |||||    
T  32621623 aatgcattttatatgcaggggccggggttcgaatcccagacaccccacttctccacatttaaaatgtgtgagctccagcca 32621543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 18904294 - 18904374
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  18904294 aatgcattttatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 18904374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 361229 - 361272
Alignment:
Q  205 agacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||||||||  |||| |||||||||||||||||||||||||    
T  361229 agacaccccacttctccatatttaaaatatgtgagctctagcca 361272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 20846072 - 20846145
Alignment:
Q  165 gacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtga 238  Q
    ||||||||||||||||| ||| ||| ||| |||||| |||| ||||| ||||  || ||||||||||| |||||    
T  20846072 gacaatgcataatatatgcagtggttggggttcgaaccctatacaccacacttctctacatttaaaatgtgtga 20846145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 31104915 - 31104991
Alignment:
Q  172 cataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||| ||||| |||||| |||  |||||||||  |||||||||||  |||||||| ||||| ||||||||||||||||    
T  31104915 catattatatgcaggggccggagttcgaatcccggacaccccacttctccacatt-aaaatgtgtgagctctagccat 31104991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 32142050 - 32141997
Alignment:
Q  195 ttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| || ||||||||||||  |||||||||||||| ||||||||| |||||    
T  32142050 ttcgaaccccagacaccccacttttccacatttaaaatgtgtgagctccagcca 32141997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 492933 - 493009
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| |||||| |||| |||||| ||| |||||||||||  |||||| ||||| | |||||||| ||||    
T  492933 tgcatattatatgcaggggccggggttcgaaccctggacaccccacttctccacaattaaattgtgtgagctgtagc 493009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 3709888 - 3709968
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| ||||| || |||  ||| |||||| || ||||||||||||  |||||||||||||| || |||||| |||||    
T  3709888 aatgcatattatatgcaaggggtggggttcgaaccccagacaccccacttctccacatttaaaatgtgagagctccagcca 3709968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 7897159 - 7897111
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccact 216  Q
    |||||||||||||| ||||||||||| |||||| ||  |||||||||||    
T  7897159 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccact 7897111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 25884029 - 25883949
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||||| ||||||||||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  25884029 aatgcataatatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 25883949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 23090282 - 23090362
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||||| ||  ||||||| ||||||||| ||||||||||||  |||||||  ||||| ||||||||| |||||    
T  23090282 aatgcataatatatgcaatggtcggggttcgaatcccagacaccccacttctccacataaaaaatgtgtgagctccagcca 23090362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 31586978 - 31587073
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcc-atactttaccaacaaaa 264  Q
    |||||| ||||| ||||||||||  |||||||||  |||||||||||  |||||| ||||| | |||||||||||||| |||||| ||||| ||||    
T  31586978 tgcatattatatgcaggggtcggagttcgaatcccggacaccccacttctccacaattaaattgtgtgagctctagccaatacttgaccaaaaaaa 31587073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 9114048 - 9114114
Alignment:
Q  176 atatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||| ||||||||| | ||||||| | ||||||||||||  |||||||||||||| |||||||||    
T  9114048 atatatgcaggggtcgagattcgaattccagacaccccacttctccacatttaaaatgtgtgagctc 9114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 17729022 - 17729100
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||| ||| ||||| |||||  |||||| ||||| | |||||||||||||||    
T  17729022 tgcatattatatgcaggggtcggggttcgaaccctggacactccacttctccacaattaaattgtgtgagctctagcca 17729100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 19030251 - 19030329
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||| ||| ||||| |||||  |||||| ||||| | |||||||||||||||    
T  19030251 tgcatattatatgcaggggtcggggttcgaaccctggacactccacttctccacaattaaattgtgtgagctctagcca 19030329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 23653255 - 23653178
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||| ||||||||||| |||||| ||   ||||| |||| ||||||| ||||||| |||||||||||||||    
T  23653255 tgcataatatatgcaggggtcggggttcgaaccccgaacacctcacttatccaca-ttaaaatgtgtgagctctagcca 23653178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 43280090 - 43280159
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaa 230  Q
    |||||||| |||||||| ||| |||||| |||| |||||||||  |||||||||||  ||||||||||||    
T  43280090 cagggacattgcataatttatgcaggggccggggttcgaatcccggacaccccacttctccacatttaaa 43280159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 27329973 - 27329893
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  27329973 aatgcattttatatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 27329893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 51879124 - 51879204
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  51879124 aatgcattttatatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 51879204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 24303412 - 24303498
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| |||||||| ||| |||||| |||| |||||| ||  |||||||||||  ||||||||| || | |||||||||||||||    
T  24303412 cagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacattt-aattgtgtgagctctagcca 24303498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 49443471 - 49443385
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| |||||||| ||| |||||| |||  |||||| ||  |||||||||||  ||||||||| |||| |||||||||||||||    
T  49443471 cagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccacttctccacattt-aaatgtgtgagctctagcca 49443385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 30779606 - 30779528
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||| ||| |||||||||||  |||||| || || | |||||| ||||||||    
T  30779606 tgcatattatatgcaggggtcggggttcgaaccctggacaccccacttctccacaatttaattgtgtgagttctagcca 30779528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 34102650 - 34102572
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  34102650 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaactgtgtgagctctagcca 34102572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 39719966 - 39720044
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  39719966 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 39720044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 41936446 - 41936368
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  41936446 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 41936368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 47098763 - 47098841
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| || |||||| |||||  |||||| ||||| | |||||||||||||||    
T  47098763 tgcatattatatgcaggggccggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctagcca 47098841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 50381734 - 50381788
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccact 216  Q
    ||||| |||||| ||||||| ||||||||||| |||||||||  |||||||||||    
T  50381734 agggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccact 50381788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 53432776 - 53432698
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  53432776 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 53432698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 26880202 - 26880286
Alignment:
Q  164 ggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    ||||| |||||||| ||| ||||||||||| ||||||    ||||||||||||  ||||||||| |||| ||||||||||| ||||    
T  26880202 ggacattgcataatttatgcaggggtcggggttcgaacttcagacaccccacttctccacattt-aaatgtgtgagctctaaccat 26880286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 41710627 - 41710692
Alignment:
Q  183 caggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| |||| |||||||||  |||||| ||||  |||||||||||||| ||||||||| |||||    
T  41710627 caggggccggggttcgaatcccggacacctcacttctccacatttaaaatgtgtgagctccagcca 41710692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 15085725 - 15085645
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| ||  |||||| ||||  |||| ||||||||| ||||||||| |||||    
T  15085725 aatgcattttatatgcaggggtcggggttcgaaccccggacacctcacttctccatatttaaaatgtgtgagctccagcca 15085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 19222634 - 19222566
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    |||||||| |||||||| ||| |||||| |||| |||||| ||  |||||||||||  |||||||||||    
T  19222634 cagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaa 19222566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 2908138 - 2908053
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||||||||||| |||||| |||| |||||| ||| |||||||||||  ||| || ||||||| |||||||||||||||    
T  2908138 agggacaatgcataatatatgcaggggccggggttcgaaccctggacaccccacttctccgca-ttaaaatgtgtgagctctagcca 2908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 13105114 - 13105194
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||||||||||||||||| || ||| |||| |||||| |  ||||||||||||  |||||||||||||| |||||||||    
T  13105114 agggacaatgcataatatatgcaagggccggggttcgaacctcagacaccccacttctccacatttaaaatgtgtgagctc 13105194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 13059224 - 13059138
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||||||| ||| ||||||  ||| |||||| ||  |||||||||||  |||||||||||||| |||| |||| |||||    
T  13059224 agggacaatgcataatttatgcaggggcaggggttcgaacccctgacaccccacttctccacatttaaaatgtgtgtgctccagcca 13059138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 27077136 - 27077064
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||| ||||| ||||||||||| |||||||||  |||||||||||  |||||| ||||| | |||||||||    
T  27077136 tgcatattatatgcaggggtcggggttcgaatcccggacaccccacttctccacaattaaattgtgtgagctc 27077064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34873115 - 34873195
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| |   |||||||||||  |||||||||||||| ||||||||| |||||    
T  34873115 aatgcattttatatgcaggggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagcca 34873195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 36035220 - 36035140
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| |   |||||||||||  |||||||||||||| ||||||||| |||||    
T  36035220 aatgcattttatatgcaggggtcggggttcgaacctcggacaccccacttctccacatttaaaatgtgtgagctccagcca 36035140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 5570932 - 5571003
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| ||||||||||  |||||| ||  |||||||||||  |||||| ||||| |||||||||||||||||    
T  5570932 tatatgcaggggtcggagttcgaaccccggacaccccacttctccacaattaaattatgtgagctctagcca 5571003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 31153058 - 31152979
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||| |||||  ||||||| || |||||| ||| |||||||||||  |||||| ||||| | ||||||||||||||||    
T  31153058 tgcatattatatgtaggggtcagggttcgaaccctggacaccccacttctccacaattaaattgtgtgagctctagccat 31152979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 39587585 - 39587656
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| ||||||||||| |||||| ||| ||||| |||||  |||||| ||||| | |||||||||||||||    
T  39587585 tatattcaggggtcgggattcgaaccctggacactccacttctccacaattaaattgtgtgagctctagcca 39587656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 44673680 - 44673609
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| ||||||||||| |||||| || |||||| |||||  |||||| ||||| | |||||||||||||||    
T  44673680 tatatgcaggggtcggggttcgaaccccagacactccacttttccacaattaaattgtgtgagctctagcca 44673609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 3912175 - 3912125
Alignment:
Q  198 gaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| |||||||||||  |||||||||| ||| |||||||||||||||    
T  3912175 gaatcctggacaccccacttctccacatttataatgtgtgagctctagcca 3912125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 5328606 - 5328528
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||| ||||  |||||| ||||||| |||||||||||||||    
T  5328606 tgcatattatatgcaggggccggggttcgaaccccggacacctcacttctccacaattaaaatgtgtgagctctagcca 5328528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 12770391 - 12770476
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| |||||||| ||| |||||| |||| |||||| ||  |||||||||||  ||||||||| || | |||||||||||||||    
T  12770391 agggacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacattt-aattgtgtgagctctagcca 12770476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 34894400 - 34894478
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  34894400 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacagttaaattgtgtgagctctagcca 34894478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 43846954 - 43847043
Alignment:
Q  158 tgacagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| ||| |||||||| ||| |||||||||   |||||| ||| |||||||||||  ||||||||| || | |||||||||||||||    
T  43846954 tgacaggaacattgcataatttatgcaggggtcgatgttcgaaccctggacaccccacttctccacattt-aattgtgtgagctctagcca 43847043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 19733144 - 19733103
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcc 203  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  19733144 agggataatgcataatatatgcaggggtcggggttcgaatcc 19733103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 21133051 - 21133116
Alignment:
Q  183 caggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| |||| |||||| || ||||||||||||  |||||| ||||| | |||||||||||||||    
T  21133051 caggggccggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctagcca 21133116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 33810668 - 33810749
Alignment:
Q  167 caatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||||  ||||| |||||| |||| ||| || ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  33810668 caatgcattttatatgcaggggccggggttcaaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 33810749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 38730559 - 38730522
Alignment:
Q  205 agacaccccactgatccacatttaaaatatgtgagctc 242  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  38730559 agacaccccacttctccacatttaaaatatgtgagctc 38730522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 47440851 - 47440771
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||||||| ||||||||||| |||||| ||| |||||||||||  |||||||| || || ||||||||| |||||    
T  47440851 aatgcataatatatgcaggggtcggggttcgaaccctggacaccccacttctccacattaaatatgtgtgagctccagcca 47440771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 35815876 - 35815948
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    ||||| ||||||||||| ||||||||| |||||| |||||  |||||| ||||| | ||||||||||||||||    
T  35815876 tatatgcaggggtcggggttcgaatcccagacactccacttctccacaattaaattgtgtgagctctagccat 35815948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 43119467 - 43119393
Alignment:
Q  174 taatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| || ||||||||||| |||||| ||| |||||||||||  |||||| ||||| | |||||||||||||||    
T  43119467 taataaatgcaggggtcggggttcgaaccctggacaccccacttctccacaattaaattgtgtgagctctagcca 43119393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 41331127 - 41331059
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    |||||||| |||||||| ||| ||||||||||| ||||||| |  |||||||||||  |||||||||||    
T  41331127 cagggacattgcataatttatgcaggggtcggggttcgaattccggacaccccacttctccacatttaa 41331059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 46758271 - 46758351
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| ||||||  |  |||||||||||  |||||||||||||| ||||||||| |||||    
T  46758271 aatgcattttatatgcaggggtcggggttcgaactccggacaccccactcctccacatttaaaatgtgtgagctccagcca 46758351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 28735271 - 28735196
Alignment:
Q  164 ggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgag 239  Q
    |||||||||||||||||| ||| |||||   ||||||| ||||||| ||||||  |||| ||||||||| ||||||    
T  28735271 ggacaatgcataatatatgcagaggtcgaagttcgaattctagacatcccacttctccatatttaaaatgtgtgag 28735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 21762931 - 21762853
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||| |  ||| ||||||||  |||||| ||||| | |||||||||||||||    
T  21762931 tgcatattatatgcaggggtcgggattcgaacctcagagaccccacttctccacaattaaattgtgtgagctctagcca 21762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 24188501 - 24188571
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagc 240  Q
    |||||| ||||| ||||||||||| |||||| || ||||||||||||  |||||| ||||| | |||||||    
T  24188501 tgcatattatatgcaggggtcggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagc 24188571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 30388546 - 30388468
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| || |||||| |||||  |||||| ||||| | |||||||||||||||    
T  30388546 tgcatattatatgcaggggccggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctagcca 30388468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 46645738 - 46645812
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| |||||||||    
T  46645738 aatgcattttatatgcaggggccggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagctc 46645812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 27788291 - 27788360
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaa 230  Q
    |||||| | |||||||| ||| |||||| |||| |||||| || ||||||||||||  ||||||||||||    
T  27788291 cagggatattgcataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaa 27788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 27791447 - 27791516
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaa 230  Q
    |||||| | |||||||| ||| |||||| |||| |||||| || ||||||||||||  ||||||||||||    
T  27791447 cagggatattgcataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaa 27791516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 29461862 - 29461782
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgg-gtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||||||||||||||||| |||||||||| | |||||| ||| |||||||||||  || | ||||||||| ||| |||||    
T  29461862 agggacaatgcataatatatgcaggggtcggaggttcgaa-cctggacaccccacttttctatatttaaaatgtgtaagctc 29461782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 9712237 - 9712161
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| ||||||||||| |||||| ||  |||||||||||  |||||| ||||| | |||||||| ||||    
T  9712237 tgcatattatatgcaggggtcggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctttagc 9712161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 13702054 - 13702134
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| ||| || ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  13702054 aatgcattttatatgcaggggccggggttcaaaccccggacaccccactcctccacatttaaaatgtgtgagctccagcca 13702134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 16200590 - 16200666
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| ||||||||||| |||||| || |||||||||| |  |||||| ||||| | ||||| |||||||    
T  16200590 tgcatattatatgcaggggtcggggttcgaaccccagacaccccatttctccacaattaaattgtgtgatctctagc 16200666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 6734779 - 6734700
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||||||||||  ||||| ||||||||||||||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  6734779 aatgcataatatatgtaggggccgggtttcgaatccc-gacaccccacttctccacatttaaaatgtgtgagctccagcca 6734700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 3740992 - 3741063
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| ||||||||||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  3740992 tatatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 3741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 7545437 - 7545367
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagc 240  Q
    |||||| ||||| |||||||| || |||||||||  |||||||||||  |||||||||||||| |||||||    
T  7545437 tgcatattatatgcaggggtcaggattcgaatcccggacaccccacttctccacatttaaaatgtgtgagc 7545367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 8241081 - 8241155
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| ||||| || |||||||| |||||| ||  |||||||||||  |||||||||||||| |||||||||||    
T  8241081 tgcatattatatgcaagggtcggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctcta 8241155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 3821462 - 3821382
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| |||||||||  || ||||||||  |||||||||||||| ||||||||| |||||    
T  3821462 aatgcattttatatgcaggggccggggttcgaatcccggaaaccccacttctccacatttaaaatgtgtgagctccagcca 3821382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 16745112 - 16745191
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||| |||||  |||||||||  ||||||  | ||||||||||||  |||||| ||||| ||||||||||||||||||    
T  16745112 tgcatattatatgtaggggtcggagttcgaactccagacaccccacttctccacaattaaattatgtgagctctagccat 16745191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 25729472 - 25729401
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| ||||||||||| |||||| || |||||| |||||  |||||| ||||| | |||||||||||||||    
T  25729472 tatatgcaggggtcggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctctagcca 25729401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 39800077 - 39799998
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagct 241  Q
    |||||||||||||||| ||| ||||||  |||  ||||| ||  |||||||||||  |||||||||||||| ||||||||    
T  39800077 agggacaatgcataatttatgcaggggcaggggctcgaacccctgacaccccacttctccacatttaaaatgtgtgagct 39799998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 15241427 - 15241505
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||| |   |||||||||||  |||||| ||||| | |||||||||||||||    
T  15241427 tgcatattatatgcaggggtcggggttcgaacctcggacaccccacttctccacaattaaattgtgtgagctctagcca 15241505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 41179842 - 41179764
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||| | |||| |||||||||  ||||| |||||  |||||||||||| | |||||||||||||||    
T  41179842 tgcatattatatgcaggagccggggttcgaatcccggacactccacttctccacatttaaattgtgtgagctctagcca 41179764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 12256556 - 12256519
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatccta 205  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  12256556 aatgcataatatatgcaggggtcggggttcgaatccta 12256519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 13501419 - 13501366
Alignment:
Q  195 ttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||  ||||||||||| ||||||| ||||| ||||||||||| |||||    
T  13501419 ttcgaatcccggacaccccacttatccacaattaaattatgtgagctccagcca 13501366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 23937974 - 23937901
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagct 241  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| ||||||||    
T  23937974 aatgcattttatatgcaggggccggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagct 23937901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 37684594 - 37684526
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    |||||||| |||||||| ||| ||| ||||| | ||||||  | |||||||||||| ||||||||||||    
T  37684594 cagggacattgcataatttatgcagaggtcgaggttcgaactccagacaccccacttatccacatttaa 37684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 41998371 - 41998451
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    ||||||||| |||||||||| ||  ||||||| |||||| ||||||||||| |||  |||||||||||||| |||||||||    
T  41998371 agggacaattcataatatatacaacggtcggggttcgaaccctagacaccctacttctccacatttaaaatgtgtgagctc 41998451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 23233973 - 23234059
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcc 247  Q
    |||||| | |||||| ||||| ||||||||||| |||||| || |||||||| |||  |||||||||| ||| ||||||||||||||    
T  23233973 cagggatattgcatattatatgcaggggtcggggttcgaaccccagacaccctacttctccacatttataatgtgtgagctctagcc 23234059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 35605662 - 35605586
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| ||||||||||| |||||| |||| ||||||||||  |||||| ||||| | |||||||||||||    
T  35605662 tgcatattatatgcaggggtcggggttcgaaccctaaacaccccacttctccacaattaaattgtgtgagctctagc 35605586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 23991312 - 23991226
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| |||||||| ||| |||||| |||| |||||| ||| |||||||||||  ||||||||| || | |||||||||||||||    
T  23991312 cagggacattgcataatttatgcaggggccggggttcgaaccctggacaccccacttctccacattt-aattgtgtgagctctagcca 23991226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 27579488 - 27579435
Alignment:
Q  195 ttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||||||||||| |  |||||||||||||| |||||||||||||||    
T  27579488 ttcgaaccctagacaccccatttctccacatttaaaatgtgtgagctctagcca 27579435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 5431064 - 5431000
Alignment:
Q  184 aggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||||| ||||||   | ||||||||||| ||||||||||||||| ||||||||| |||||    
T  5431064 aggggtcggggttcgaactttggacaccccacttatccacatttaaaatgtgtgagctccagcca 5431000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 18512616 - 18512536
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  18512616 aatgcattttatatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 18512536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 34557372 - 34557285
Alignment:
Q  161 cagggacaatgcataa-tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| ||||||| | ||| ||||||||||| |||||||| | ||||||| |||  ||||||||| |||| |||||||||||||||    
T  34557372 cagggacattgcataaatttatgcaggggtcggggttcgaatcttggacaccctacttctccacattt-aaatgtgtgagctctagcca 34557285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 42735904 - 42735984
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    ||||| |||||||||||||| |||||||| || || |||| |  |||||||||||  || ||||||||||| |||||||||    
T  42735904 agggaaaatgcataatatatgcaggggtctgggtttgaattccggacaccccacttctctacatttaaaatgtgtgagctc 42735984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 50103890 - 50103970
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||||||||||  ||||||| || |||||| ||| |||||| ||||  |||||||||||||| ||| | |||||||||    
T  50103890 aatgcataatatatgtaggggtcagggttcgaaccctggacacctcacttctccacatttaaaatgtgtcaactctagcca 50103970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 18911889 - 18911960
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| |||||||| || |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  18911889 tatatgcaggggtcagggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagctccagcca 18911960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 1604263 - 1604189
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| |||||  |||||||||| |||||| ||| |||||| || |  |||||||||||||| |||||||||||    
T  1604263 tgcatattatatgtaggggtcggggttcgaacccttgacaccacaattctccacatttaaaatgtgtgagctcta 1604189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 9866223 - 9866145
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||||| |||||||||   |||| |||||  |||||| ||||| | |||||||||||||||    
T  9866223 tgcatattatatgcaggggtcggggttcgaatcccgaacactccacttttccacaattaaattgtgtgagctctagcca 9866145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 21265687 - 21265765
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  21265687 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 21265765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 33033157 - 33033231
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| ||||| |||||  |||| |||||| ||||||||||||| |  |||||| ||||||| |||||||||||    
T  33033157 tgcatattatatgcagggaccggggttcgaaccctagacaccccatttctccacaattaaaatgtgtgagctcta 33033231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 50533099 - 50533167
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgag 239  Q
    |||||||||||| ||||||||||  |||||  ||| ||| ||||||| ||||||||||||||| ||||||    
T  50533099 tgcataatatatgcaggggtcggagttcgac-cctggacgccccacttatccacatttaaaatgtgtgag 50533167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 2997704 - 2997624
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    ||||||| |||||||| ||| ||||||  ||| |||||| ||  ||||||||||   |||| |||||||||||||||||||    
T  2997704 agggacattgcataatttatgcaggggcaggggttcgaacccctgacaccccacatctccatatttaaaatatgtgagctc 2997624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 45416226 - 45416158
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    |||| ||| |||||||| ||| |||||| |||| |||||||||  |||||||||||  |||||||||||    
T  45416226 caggaacattgcataatttatgcaggggccggggttcgaatcccggacaccccacttctccacatttaa 45416158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 33933786 - 33933700
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| |||||||||||| |||||| |||| |||||  ||| |||||||||||  ||||||||||| || |||||||| ||||||    
T  33933786 agggacattgcataatatatgcaggggccggggttcgacccctggacaccccacttctccacatttaatatgtgtgagctatagcca 33933700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 54215817 - 54215871
Alignment:
Q  195 ttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||| || ||||||||||||  |||||||||||||||||||||||||||||||    
T  54215817 ttcgaaccccagacaccccacttctccacatttaaaatatgtgagctctagccat 54215871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 31187561 - 31187505
Alignment:
Q  188 gtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| ||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  31187561 gtcggggttcgaatcccagacactccacttatccacatttaaaatgtgtgagctcta 31187505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 41137967 - 41137881
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| |||||||||||| ||||||| ||| |||||| |  ||||||||||||  | || ||||||||| | |||||||||||||    
T  41137967 agggacattgcataatatatgcaggggttggggttcgaaccacagacaccccacttcttcatatttaaaatgtttgagctctagcca 41137881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 43539835 - 43539920
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcc 247  Q
    ||||||||| ||||||||||  |||||  | | ||||||| ||||||||||||||  |||||||||||||| ||||| || |||||    
T  43539835 agggacaatacataatatatgtaggggctgaggttcgaattctagacaccccacttctccacatttaaaatgtgtgaactttagcc 43539920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 624505 - 624585
Alignment:
Q  164 ggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    ||||| |||||||| ||| ||||||  ||| |||||| ||  |||||||||||  |||||||||||||| |||||||||||    
T  624505 ggacattgcataatttatgcaggggcaggggttcgaacccctgacaccccacttctccacatttaaaatgtgtgagctcta 624585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 2629601 - 2629688
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||||| |||||||| ||| ||||||||||| |||||| ||   ||||||||||  ||||||||| || | ||||||||||||||||    
T  2629601 cagggacattgcataatttatgcaggggtcggggttcgaaccccgaacaccccacttctccacattt-aattgtgtgagctctagccat 2629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 36099224 - 36099144
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| |||||| |||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  36099224 aatgcattttatatgcaggggccggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagcca 36099144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 11294886 - 11294800
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| |||||||| ||| |||||| |||| |||||| ||  |||||||||||  ||||||||| |||| | |||||||||||||    
T  11294886 cagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacattt-aaatgtttgagctctagcca 11294800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 51890819 - 51890905
Alignment:
Q  161 cagggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||| |||||||| ||| |||||| |||| |||||| ||  |||||||||||  ||||||||| || | |||||||||||||||    
T  51890819 cagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccacttctccacattt-aattgtgtgagctctagcca 51890905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 40051653 - 40051731
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| |||||  |||||| ||| |||||| || ||||||||||||  |||||| ||||| | |||||||||||||||    
T  40051653 tgcatattatatgtaggggtaggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctagcca 40051731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 42134496 - 42134418
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| || |||||||| ||||||  |  |||||||||||  |||||| ||||| |||||||||||||||||    
T  42134496 tgcatattatatgcaagggtcggggttcgaactccggacaccccacttctccacaattaaattatgtgagctctagcca 42134418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 47890726 - 47890800
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| ||||| ||||||||||| |||||| || |||||| |||||  |||||| ||||| | |||||||||||    
T  47890726 tgcatattatatgcaggggtcggggttcgaaccccagacactccacttctccacaattaaattgtgtgagctcta 47890800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 47929276 - 47929354
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| ||||||||| | |||||| |   || ||||||||  |||||||||||||| |||||||||||||||    
T  47929276 tgcatattatatgcaggggtcgaggttcgaacctcggaaaccccacttctccacatttaaaatgtgtgagctctagcca 47929354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 13161791 - 13161855
Alignment:
Q  183 caggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||||||| |||||| || |||||| |||||  || ||||||||||| |||||||||||||||    
T  13161791 caggggtcggggttcgaaccccagacacaccacttctc-acatttaaaatttgtgagctctagcca 13161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 2484025 - 2484097
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctc 242  Q
    |||||||||||| ||||||| ||| ||| || | || ||||||||||  |||| |||||||||||| ||||||    
T  2484025 tgcataatatatgcaggggttggggttctaaccttatacaccccacttctccatatttaaaatatgcgagctc 2484097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 7686294 - 7686222
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    ||||| |||||| |||| |||||| ||| ||||| |||||  |||||| ||||| | ||||||||||||||||    
T  7686294 tatatgcaggggccggggttcgaaccctggacactccacttctccacaattaaattgtgtgagctctagccat 7686222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 11375928 - 11375852
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||| ||||  |||||| ||||||| |||||||||||||    
T  11375928 tgcatattatatgcaggggccggggttcgaaccccggacacctcacttctccacaattaaaatgtgtgagctctagc 11375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 13578504 - 13578428
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    |||||| ||||| ||||||||||| |||||| ||  |||||||||||  |||||| ||||| | |||||||| ||||    
T  13578504 tgcatattatatgcaggggtcggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctttagc 13578428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 23176762 - 23176683
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| ||  ||||||||| |  |||||||||||||| ||||||||| |||||    
T  23176762 aatgcattttatatgcaggggtcggggttcgaaccccggacaccccattc-tccacatttaaaatgtgtgagctccagcca 23176683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 23778862 - 23778790
Alignment:
Q  172 cataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||| ||||| ||||||| ||| |||||| || ||||||||||||  |||||| ||||| | |||||||||||    
T  23778862 catattatatgcaggggttggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctcta 23778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 32293133 - 32293216
Alignment:
Q  164 ggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| |||||||| ||| ||||||||||| || ||| ||| ||||  |||||  ||||||||| || |||||||||||||||||    
T  32293133 ggacattgcataatttatgcaggggtcggggttagaaccctggacattccacttctccacattt-aattatgtgagctctagcca 32293216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 42411531 - 42411475
Alignment:
Q  161 cagggacaatgcataat-atatccaggggtcgggtttcgaatcctagacaccccact 216  Q
    ||||||||||||||||| |||| ||||||||||| |||||| ||  |||||||||||    
T  42411531 cagggacaatgcataattatatgcaggggtcggggttcgaaccccggacaccccact 42411475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 42664006 - 42664089
Alignment:
Q  164 ggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||| |||||||| ||  ||| ||| ||| |||||||||| |||||||||||  ||||||||| || | |||||||||||||||    
T  42664006 ggacattgcataatttacgcagaggttggggttcgaatcctggacaccccacttctccacattt-aattgtgtgagctctagcca 42664089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 5947895 - 5947975
Alignment:
Q  168 aatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||||  ||||| ||||||||||| |||||| ||  |||||||||||  |||||||||||||| ||||||||| |||||    
T  5947895 aatgcattttatatgcaggggtcggggttcgaaccccggacaccccactcctccacatttaaaatgtgtgagctccagcca 5947975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 23919524 - 23919457
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    ||||||| ||||||||||||  |||||||||| ||||||||| |||||||||| |  |||||||||||    
T  23919524 agggacattgcataatatatggaggggtcggggttcgaatcccagacaccccatttctccacatttaa 23919457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 17034766 - 17034844
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||| |||||| |||||||||  ||||| |||||  |||||| ||||| |||||||||||||||||    
T  17034766 tgcatattatatgcaggagtcggggttcgaatcccggacactccacttctccacaattaaattatgtgagctctagcca 17034844  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 17089274 - 17089352
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||| |||||| |||||||||  ||||| |||||  |||||| ||||| |||||||||||||||||    
T  17089274 tgcatattatatgcaggagtcggggttcgaatcccggacactccacttctccacaattaaattatgtgagctctagcca 17089352  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 23405219 - 23405273
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccact 216  Q
    ||||||| |||||||||||| ||||||||||| |||||| ||| |||||||||||    
T  23405219 agggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccact 23405273  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 44898485 - 44898442
Alignment:
Q  206 gacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||||||||  |||||||||||||| ||||||||||||||||    
T  44898485 gacaccccacttctccacatttaaaatgtgtgagctctagccat 44898442  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 20919633 - 20919718
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    ||||||| |||||||| ||| | |||| |||| |||||| ||  |||||||||||  ||||||||| || |||||||||||||||||    
T  20919633 agggacattgcataatttatgctggggccggggttcgaaccccggacaccccacttctccacattt-aattatgtgagctctagcca 20919718  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 33228972 - 33228894
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  33228972 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 33228894  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 3596276 - 3596340
Alignment:
Q  165 gacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaa 229  Q
    |||| |||||||| ||| ||||||||||| |||||| ||  |||||||||||  |||||||||||    
T  3596276 gacattgcataatttatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaa 3596340  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 11189966 - 11190038
Alignment:
Q  177 tatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    ||||| |||||||||||  ||||| || ||||| ||||||  |||||| ||||| | ||||||||||||||||    
T  11189966 tatatgcaggggtcgggggtcgaaccccagacatcccacttctccacaattaaattgtgtgagctctagccat 11190038  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 20497209 - 20497157
Alignment:
Q  195 ttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcc 247  Q
    |||||||||  |||||||||||  |||||||||||||| ||||||||| ||||    
T  20497209 ttcgaatcccggacaccccacttctccacatttaaaatgtgtgagctccagcc 20497157  T

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Target: scaffold0117 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 18518 - 18439
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagccat 249  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | ||||||||||||||||    
T  18518 tgcatattatatacaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagccat 18439  T

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Target: scaffold0088 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 10865 - 10787
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagcca 248  Q
    |||||| ||||| |||||| |||| |||||| ||  |||||||||||  |||||| ||||| | |||||||||||||||    
T  10865 tgcatattatatgcaggggccggggttcgaaccccggacaccccacttctccacaattaaattgtgtgagctctagcca 10787  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 59217 - 59144
Alignment:
Q  170 tgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctcta 244  Q
    |||||| ||||| |||||| |||| |||||||| | ||||||||| |  |||||||||||||| |||||||||||    
T  59217 tgcatattatatgcagggg-cggggttcgaatcttggacaccccatttttccacatttaaaatttgtgagctcta 59144  T

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Target: scaffold0250 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 15028 - 15111
Alignment:
Q  162 agggacaatgcataatatatccaggggtcgggtttcgaatcctagacaccccactgatccacatttaaaatatgtgagctctagc 246  Q
    ||||||| |||||||| ||| ||||||||  | |||||| || | ||||||||||  ||||||||| || |||||||||||||||    
T  15028 agggacattgcataatttatgcaggggtcatggttcgaaccccaaacaccccacttctccacattt-aattatgtgagctctagc 15111  T

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