View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_high_3 (Length: 434)
Name: NF17395_high_3
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 32866335 - 32865954
Alignment:
| Q |
18 |
atatctaaccgtaggtttatttaatagcactactaattgttaagattatttgtaaagtgagtataggccatttattttttacaaaaccgcatatgtaaaa |
117 |
Q |
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| T |
32866335 |
atatttaaccgtaggtttatttaatagcactactaattgttaagattatttgtaaagtgagtataggccatttattttttacaaaaccccatatgtaaaa |
32866236 |
T |
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| Q |
118 |
taaatcttgtaaatagagtaaaagatttgtaggaaagaaaaagggcttcatataattcaaagtccaaacaactatttttcttcttacaacatatacaacc |
217 |
Q |
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| T |
32866235 |
taaatcttgtaaatagagtaaaagattggtaggaaagaaaaagggcttcatataattcaaagtccaaacaactatttttcttcttacaacatagtaaacc |
32866136 |
T |
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| Q |
218 |
aatgatgcagcacctgcaaccctcatttccnnnnnnngtttgatataaattttttagggtaaagaccaagtccaagaaaggagatcataaagctcaatga |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32866135 |
aatgatgcagcacctgcaaccctcatttcctttttttgtttgatataaaatttttagggtaaagaccaagtccaagaaaggagatcatagagctcaatga |
32866036 |
T |
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| Q |
318 |
acactcaaacgaatttaactttacttctccatgaggatactgccgaaactcaaatataaaacttccaaattcaaaatttgac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32866035 |
acactcaaacgaatttaactttacttctccatgaggatactgccgaaactcaaatataaaacttccaaattcaaaatttgac |
32865954 |
T |
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