View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_high_4 (Length: 422)
Name: NF17395_high_4
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 21963577 - 21963979
Alignment:
| Q |
1 |
aaattaagacggtggaaatcgacatgcttaatattaccattaattctctgcaagcggagcgaaagaagcttcaagaagaactcacaactggagcttctgc |
100 |
Q |
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| T |
21963577 |
aaattaagacggtggaaatcgacatgcttaatattaccattaattctctacaagcggagcgaaagaagcttcaagaagaactcacaaatggagcttctgc |
21963676 |
T |
|
| Q |
101 |
gaagagagatcttgagttggcaagaaacaagataaaggagctacaaagacagatgcagcttgaggctaaccaaacaaaaggccaacttttgttgcttaaa |
200 |
Q |
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| T |
21963677 |
gaagagagatcttgagttggcaagaaacaagataaaggagctacaaagacagatgcagcttgaggctaaccaaacaaaaggccaacttttgttgcttaaa |
21963776 |
T |
|
| Q |
201 |
caacaagtttctggtctacaagtgaaagaagaggcgggtgccataaaagatgccgagattgacaagaaattgaaagctgtgaatgatttagaggttgctg |
300 |
Q |
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| T |
21963777 |
caacaagtttctggtctacaagtgaaagaagaggcgggtgccataaaagatgccgagattgacaagaaattgaaagctgtgaatgatttagaggttgctg |
21963876 |
T |
|
| Q |
301 |
ttgtggagcttaagaggaaaaataaagaacttcaatacgagaagcgagagctaactgttaaactcaatgctgccgaatctagagttgcggagctctccaa |
400 |
Q |
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| T |
21963877 |
ttgtggagcttaagaggaaaaataaagaacttcaatacgagaagcgagagctaactgttaaactcaatgctgccgaatctagagttgcggagctctccaa |
21963976 |
T |
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| Q |
401 |
tat |
403 |
Q |
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| T |
21963977 |
tat |
21963979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 383
Target Start/End: Complemental strand, 42111146 - 42111018
Alignment:
| Q |
255 |
gagattgacaagaaattgaaagctgtgaatgatttagaggttgctgttgtggagcttaagaggaaaaataaagaacttcaatacgagaagcgagagctaa |
354 |
Q |
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|||||||| ||||| |||||| | ||||||||||||||| ||| | ||||| ||||||||| | ||| |||||||||||| ||||||||||||| ||| |
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| T |
42111146 |
gagattgaaaagaagttgaaaacagtgaatgatttagagattgaagctgtggggcttaagagaagaaacaaagaacttcaacacgagaagcgagaattaa |
42111047 |
T |
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| Q |
355 |
ctgttaaactcaatgctgccgaatctaga |
383 |
Q |
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| T |
42111046 |
ctgttaaacttaatgctgctgagtctaga |
42111018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 42111272 - 42111148
Alignment:
| Q |
165 |
gctaaccaaacaaaaggccaacttttgttgcttaaacaacaagtttctggtctacaagtgaaagaagaggcgggtgccataaaagatgccgagattgaca |
264 |
Q |
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| T |
42111272 |
gctaaccagacaaaaggccagttgttgttgcttaaacaaaaagtttctggtctacaagcaaaagaggaagaggttgtgaaaaaagatgctgagattgaaa |
42111173 |
T |
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| Q |
265 |
agaaattgaaagctgtgaatgattt |
289 |
Q |
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| || |||||| ||||||||||||| |
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| T |
42111172 |
ataacttgaaaactgtgaatgattt |
42111148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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