View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_high_6 (Length: 344)
Name: NF17395_high_6
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 31530613 - 31530911
Alignment:
| Q |
18 |
acattcagaaagacaaagcatgtgttttatattgtgaaaataagggatgattttctcatttttaacacactcaaatataaagcattgaaatcaacggaaa |
117 |
Q |
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| T |
31530613 |
acattcagaaagacaaagcatgtgttttatattgtgaaaataagggatgattttttcatttttaacacactcaaatataaagcattgaaatcaatggaaa |
31530712 |
T |
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| Q |
118 |
tgttgtgtgtgtaaattaattttacactaacatcaaataaatatcaatgatttgtcctataagtagc-------------aagtacaatagctcggctgc |
204 |
Q |
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| T |
31530713 |
tgttgtgtgtgtaaattaattttacactaacatcaaataaatatcaatgatttgtcctataagtagcaagtacaattattaagtacaatagctcggctgc |
31530812 |
T |
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| Q |
205 |
tagaagtaaaaagacgttaatatgcaggagttctgatttgaacctctaattctctacttccctgcacttaatatgtgtaagtttagtaagcaatttgat |
303 |
Q |
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| T |
31530813 |
tagaagtaaaaagacgttgatatgcagaagttctgatttgaacctctaattctctacttccctgcacttaaaatgtgtaagtttactaagcaatttgat |
31530911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 31535801 - 31535844
Alignment:
| Q |
48 |
attgtgaaaataagggatgattttctcatttttaacacactcaa |
91 |
Q |
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| T |
31535801 |
attgtaaaaataagggatgattttctcatttttaacactctcaa |
31535844 |
T |
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