View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_high_9 (Length: 317)
Name: NF17395_high_9
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 12736582 - 12736880
Alignment:
| Q |
1 |
cgatttcaaccaccaatacatttgaaatttaaccttttct-gcaagcgcctcaagctgtatcaatgatagatattcattcatggagagtcgcagctaaca |
99 |
Q |
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| T |
12736582 |
cgatttcaaccaccaatacatttggaatttaaccttttcttgcaagcgcctcaagctgtatcaatgatagatattcattcatggagagtcgcagctaaca |
12736681 |
T |
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| Q |
100 |
atatatgctatgttttaatttaccaaatactcaataacgagggaaaactcaactcataaaacacaactaaggtctcatcgattctatagtgacaattgta |
199 |
Q |
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| T |
12736682 |
atatatgctatgttttaatttaccaaatactcaataacgagggaaaactcaactcataaaacacaactaaggtctcatcgattctatagtgacaattgta |
12736781 |
T |
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| Q |
200 |
ttgtgctctagcatgaattggagaacctattcaaaaatgtgatagaatgttcaatggacattatccaagcaattattaaagagaacacatgtttaaaat |
298 |
Q |
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| T |
12736782 |
ttgtgctctagcatgaattggagaacctattcaaaaatgtgatagaatgttcaatggacattatccaagcaattattaaagagaacacatgtttaaaat |
12736880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23659811 - 23659867
Alignment:
| Q |
1 |
cgatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaagctg |
57 |
Q |
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| T |
23659811 |
cgatttcaaccactaatacgtttggagtttaaccttttctccaagagtctcaagctg |
23659867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 13026320 - 13026375
Alignment:
| Q |
2 |
gatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaagctg |
57 |
Q |
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| T |
13026320 |
gatttcagccaccaatacgtttggagtttaaccttttctgcaagagtctcaagctg |
13026375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31635909 - 31635856
Alignment:
| Q |
1 |
cgatttcaaccaccaatacatttgaaatttaaccttttctgcaagcgcctcaag |
54 |
Q |
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||||||||||||||||||| |||||| ||||| |||||| ||||| | |||||| |
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| T |
31635909 |
cgatttcaaccaccaatacgtttgaagtttaatcttttcagcaagagtctcaag |
31635856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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