View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_low_11 (Length: 298)
Name: NF17395_low_11
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 1855148 - 1854859
Alignment:
| Q |
1 |
cttttacacctccacaagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgc |
100 |
Q |
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| T |
1855148 |
cttttacacctccacaggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgc |
1855049 |
T |
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| Q |
101 |
agcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctagagtaagggtgtttcgttatttataataaaaac |
200 |
Q |
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| T |
1855048 |
agcaagtattattaatacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctggagtaagggtgtttcgttatttataataaaaac |
1854949 |
T |
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| Q |
201 |
ccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcatctc |
290 |
Q |
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| T |
1854948 |
ccttccaaattttcatggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctc |
1854859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 1818049 - 1818102
Alignment:
| Q |
10 |
ctccacaagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaa |
63 |
Q |
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| T |
1818049 |
ctccacaggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
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