View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_low_12 (Length: 273)
Name: NF17395_low_12
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9123169 - 9123426
Alignment:
| Q |
1 |
tatattgaatatgaatataatttcttacatgacagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
9123169 |
tatattgaatatgaatataaattcttacatga-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaa |
9123266 |
T |
|
| Q |
101 |
tcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaacccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
9123267 |
tcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaacccta |
9123366 |
T |
|
| Q |
201 |
caaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
9123367 |
caaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
9123426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9131276 - 9131533
Alignment:
| Q |
1 |
tatattgaatatgaatataatttcttacatgacagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| | ||| || ||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
9131276 |
tatattgaatatgaatataaattcttacatga-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaa |
9131373 |
T |
|
| Q |
101 |
tcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaacccta |
200 |
Q |
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| T |
9131374 |
tcgagaatgataatttctccttcttcccaatctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaacccta |
9131473 |
T |
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| Q |
201 |
caaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
9131474 |
caaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
9131533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 24525033 - 24525294
Alignment:
| Q |
1 |
tatattgaatatgaatataatttcttacatgacagttccttcctat---aatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaat |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||| |||||||||||| |||||||||||||| |
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| T |
24525033 |
tatattgaatatgaatataatttcttacatga-agttccttcctatgataatacatgcattgtaattagctacaatcattcctaaagataaaaagctaat |
24525131 |
T |
|
| Q |
98 |
taatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaacc |
197 |
Q |
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||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||| | |||||||| |||||||||||||||||||||| |
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| T |
24525132 |
taatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaatcattcactcccataatctcatcctttagaaccaacc |
24525231 |
T |
|
| Q |
198 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccacacaggttct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
24525232 |
ctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaatgaccgcacagattct |
24525294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 9039096 - 9038960
Alignment:
| Q |
68 |
tgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaa |
167 |
Q |
| |
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|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
9039096 |
tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat-tctgttaagaaatttctcctcgttcaaatctgtca |
9038998 |
T |
|
| Q |
168 |
ctcccattatctcatcctttagaaccaaccctacaaat |
205 |
Q |
| |
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||||||| ||||||||||||| ||||||||| |||||| |
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| T |
9038997 |
ctcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
| Q |
85 |
ataaaaagctaattaatcgagaatgataatttctccttcttc |
126 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39815150 |
ataaaaagctaattaatcgagaatgataacttctccttcttc |
39815109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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