View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17395_low_13 (Length: 227)

Name: NF17395_low_13
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17395_low_13
NF17395_low_13
[»] chr2 (2 HSPs)
chr2 (92-227)||(11135534-11135668)
chr2 (35-109)||(11135440-11135514)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 11135534 - 11135668
Alignment:
Q  92 aagtcatggccattatttaaaatataattgtctagtctttataaataacggtttgattaatgcccaatcatactcataacaacaaaatgaactcctttgg 191  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11135534 aagtcatggccattatt-aaaatataattgtctagtctttataaataacggtttgattaatgtccaatcatactcataacaacaaaatgaactcctttgg 11135632  T
Q  192 tctcacgttgactgctctatgctgtgtagtggttgt 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  11135633 tctcacgttgactgctctatgctgtgtagtggttgt 11135668  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 11135440 - 11135514
Alignment:
Q  35 ccaaaagaaaatgtttgttgctatatattattacaatttgcaacctcaatactttacaagtcatggccattattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11135440 ccaaaagaaaatgtttgttgctatatattattacaatttgcaacctcaatactttacaagtcatggccattattt 11135514  T

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