View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17395_low_14 (Length: 219)

Name: NF17395_low_14
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17395_low_14
NF17395_low_14
[»] chr2 (7 HSPs)
chr2 (30-219)||(11135706-11135895)
chr2 (87-219)||(11148303-11148435)
chr2 (87-214)||(11170933-11171060)
chr2 (87-198)||(11145044-11145155)
chr2 (81-150)||(11154835-11154904)
chr2 (1-32)||(11135927-11135958)
chr2 (87-156)||(11192288-11192357)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 11135895 - 11135706
Alignment:
Q  30 agtatgagtagacacaaaagacatgggaaagaatgaatatggagagagtatataccagaacaaaacagtcatgaaagtgaagtctgacgagactagcaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11135895 agtatgagtagacacaaaagacatgggaaagaatgaatatggagagagtatataccagaacaaaacagtcatgaaagtgaagtctgacgagactagcaag 11135796  T
Q  130 catacgaggatctgtcttagagacgttccttatgacttcacgaataatggaatgaacctttggacaagtgtccctatagaaggaaggatc 219  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11135795 catgcgaggatcagtcttagagacgttccttatgacttcacgaataatggaatgaacctttggacaagtgtccctatagaaggaaggatc 11135706  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 11148435 - 11148303
Alignment:
Q  87 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatacgaggatctgtcttagagacgttccttatgacttcacgaataatggaatgaac 186  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||||| ||  | |||||||||||||||| |||||||  |||    
T  11148435 gaacaaaacagtcatgaaagtgaagcctgacaagactaccaagcatacgaggatctttcttagaaacacttcttatgacttcacgaacaatggaactaac 11148336  T
Q  187 ctttggacaagtgtccctatagaaggaaggatc 219  Q
     ||||||||||||| ||| || ||||| |||||    
T  11148335 atttggacaagtgttcctgtaaaaggatggatc 11148303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 11171060 - 11170933
Alignment:
Q  87 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatacgaggatctgtcttagagacgttccttatgacttcacgaataatggaatgaac 186  Q
    ||||||| || ||||| |||||||| || |  | ||||||||| |||||||||||||||||||| || || ||||  |||||||||| ||||||||||||    
T  11171060 gaacaaagcaatcatggaagtgaagccttatcaaactagcaagtatacgaggatctgtcttagaaacatttcttagtacttcacgaacaatggaatgaac 11170961  T
Q  187 ctttggacaagtgtccctatagaaggaa 214  Q
     || ||||||||||||||||||||||||    
T  11170960 attaggacaagtgtccctatagaaggaa 11170933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 11145155 - 11145044
Alignment:
Q  87 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatacgaggatctgtcttagagacgttccttatgacttcacgaataatggaatgaac 186  Q
    |||||||||||||||| |||||||| || || ||||| ||||||||||||| |||||||||||| ||||| ||||||||||| || | |||||||  |||    
T  11145155 gaacaaaacagtcatggaagtgaagcctaacaagacttgcaagcatacgagtatctgtcttagaaacgtttcttatgacttcccggacaatggaactaac 11145056  T
Q  187 ctttggacaagt 198  Q
     |||||||||||    
T  11145055 atttggacaagt 11145044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 11154904 - 11154835
Alignment:
Q  81 ataccagaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatacgaggatctgtcttaga 150  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||  |||||||||||||    
T  11154904 ataccaaaacaaaacagtcatgaaagtgaagcctgacgaggctagcaagcatgcgttgatctgtcttaga 11154835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 11135958 - 11135927
Alignment:
Q  1 gtattagtgacgaatatcaaaacatgtttagt 32  Q
    ||||||||||||||||||||||||||||||||    
T  11135958 gtattagtgacgaatatcaaaacatgtttagt 11135927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 11192288 - 11192357
Alignment:
Q  87 gaacaaaacagtcatgaaagtgaagtctgacgagactagcaagcatacgaggatctgtcttagagacgtt 156  Q
    |||||||||| |||||||| ||||| || | || ||| ||||| |||||||||||||||| ||| |||||    
T  11192288 gaacaaaacaatcatgaaaatgaagcctaatgaaactggcaaggatacgaggatctgtctgagaaacgtt 11192357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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