View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_low_2 (Length: 446)
Name: NF17395_low_2
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 188 - 431
Target Start/End: Complemental strand, 3924102 - 3923860
Alignment:
| Q |
188 |
ataagtttcagattctcaggagtcacgaaaccacacaccaaacacaagtacgtgatatggaccattgaaccaagatcagatagcaatgcattgaccgtta |
287 |
Q |
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| T |
3924102 |
ataagtttcagattctcaggagtcacgaaaccacacgccaaacacaagtacgtgatatggaccattgaaccaagatcagatagcaatgcatggaccgtta |
3924003 |
T |
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| Q |
288 |
gtcaggaaaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgt |
387 |
Q |
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| T |
3924002 |
gtcaggaaa-tcacacattaaaccaattacatgataatacatggaccgttaaatcttgattagataaattcaagttccaactttggtaaatcaagtctgt |
3923904 |
T |
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| Q |
388 |
aatgataatacaaagtcaaaacatatgccttctactcttgatcc |
431 |
Q |
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| T |
3923903 |
aatgatgatacaaagtcaaaacatatgccttctactcttgatcc |
3923860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 295 - 431
Target Start/End: Complemental strand, 3907577 - 3907441
Alignment:
| Q |
295 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgata |
394 |
Q |
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| T |
3907577 |
aaatcacacattaaaccaattacatgataatacatggaccgttaaatcatgattagataaattcaagttccaactttggtaaatcaagtctgtaatgata |
3907478 |
T |
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| Q |
395 |
atacaaagtcaaaacatatgccttctactcttgatcc |
431 |
Q |
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| T |
3907477 |
atacatagtggaaacatatgccttctaatcttgatcc |
3907441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 3907818 - 3907678
Alignment:
| Q |
14 |
agaccatttgtgattccaattgctattttcatccttgttggccattcgatgatgatttctggtccacgagctgcaa--atatgtgtagaaatatcaatat |
111 |
Q |
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| T |
3907818 |
agaccattagtgattccaatagctattttcatccttgttggccattcgacgacaatttcaggtccacgagctgcaaatatatgtgcagaaatatcaatat |
3907719 |
T |
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| Q |
112 |
tagatgtattgacttataaattgggagatgaaatatttgtt |
152 |
Q |
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| T |
3907718 |
cagatgtattaacttataaattaggagatgaaatatttgtt |
3907678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 3907652 - 3907602
Alignment:
| Q |
136 |
gagatgaaatatttgttaactaataagattagctatgcattctaatttcaa |
186 |
Q |
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| T |
3907652 |
gagatgaaatatttgttaactaataagactagctatgcattctaatttcaa |
3907602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 3923365 - 3923288
Alignment:
| Q |
102 |
atatcaatattagatgtattgacttataaattgggagatgaaatatttgttaactaataagattagctatgcattctaa |
180 |
Q |
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| T |
3923365 |
atatcaatatcagaagtattggcttataaattaagagataaaagacttattaactaata-gattagcaatgcattctaa |
3923288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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