View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17395_low_5 (Length: 408)
Name: NF17395_low_5
Description: NF17395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17395_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 53675722 - 53675333
Alignment:
| Q |
18 |
ccagaatcaacaacataccaaataattccaattccattttctctgcacttttgcatttgaaaatggaacttccttcctcttctacaatacaaattggact |
117 |
Q |
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| T |
53675722 |
ccagaatcaacaacataccaaataattccaattccattttctctgcacttttgcatttgaaaatggaacttccttcctcttctacaatactaattggact |
53675623 |
T |
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| Q |
118 |
ctctttggatccaaatgatagcaaggaacttctatcatgggcaataagagttttagctaatccaaatgataccattgttgctgtgcatgttcttggttag |
217 |
Q |
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| T |
53675622 |
ctctttggacccaaatgatagcaaggaacttctatcatgggcaataagagttttagctaatccaaatgataccattgttgctgtgcatgttcttggttag |
53675523 |
T |
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| Q |
218 |
tcact-annnnnnnnnnattttaacatgtacaatttattcaaccgttttttcatactgtgaattattagtgttcttttaatagcctgaaaatttgttcaa |
316 |
Q |
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| T |
53675522 |
tcactgtttttttttttattttaacatgtacaatttattcaaccgttttttcatactgtgaattattagtgttcttttaatagcctgaaaatttgttcaa |
53675423 |
T |
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| Q |
317 |
ttttcagtagcagagaatatgaagaaacgtgtatcagtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtg |
406 |
Q |
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| T |
53675422 |
ttttcagtagcagagaatatgaagaaacgtgtatcagtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtg |
53675333 |
T |
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