View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17396_low_1 (Length: 521)

Name: NF17396_low_1
Description: NF17396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17396_low_1
NF17396_low_1
[»] chr6 (13 HSPs)
chr6 (19-499)||(1182162-1182642)
chr6 (287-486)||(1237134-1237332)
chr6 (156-311)||(896466-896621)
chr6 (365-486)||(897197-897319)
chr6 (290-421)||(1193411-1193542)
chr6 (89-291)||(1237368-1237573)
chr6 (64-187)||(896986-897106)
chr6 (64-269)||(1193157-1193367)
chr6 (246-321)||(897123-897197)
chr6 (19-200)||(1193090-1193290)
chr6 (157-200)||(793865-793908)
chr6 (81-136)||(1176671-1176726)
chr6 (396-435)||(1183394-1183433)
[»] chr4 (4 HSPs)
chr4 (77-205)||(10203758-10203883)
chr4 (357-421)||(12857196-12857260)
chr4 (22-62)||(10203567-10203607)
chr4 (390-441)||(12857477-12857529)
[»] scaffold0302 (1 HSPs)
scaffold0302 (357-421)||(19733-19797)
[»] chr7 (1 HSPs)
chr7 (357-408)||(20257183-20257234)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Original strand, 1182162 - 1182642
Alignment:
Q  19 gtgcattcttttttgttgaaaaatgttgaaaagaggtactattactttgttccaacacttataaaatacagtactgtgccttctttattgcattgtggat 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  1182162 gtgcattcttttttgttgaaaaatgttgaaaagaggtgctattactttgttccaacacttataaaataccgtactgtgccttctttattgtattgtggat 1182261  T
Q  119 gtatatggtttctaagaannnnnnnacttgctctctactaatgaatatgtggttaagaaaatgtgataaagtgataagtgctttctaataaggattatac 218  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  1182262 gtatatggtttctaagaatttttttacttgctctctactaatgaatatgtggttaagaaaatgtgataaagtgataagtgctctctaataagtattatac 1182361  T
Q  219 ttgtgatgagatttattgatatatggtatattgaatacttaggatattgttattgcatattgagtacaaatggggttttggatcagataatggagtcctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182362 ttgtgatgagatttattgatatatggtatattgaatacttaggatattgttattgcatattgagtacaaatggggttttggatcagataatggagtcctt 1182461  T
Q  319 gatatccttttaggtcgtcatgttagtattactaggtgatgagtgtttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182462 gatatccttttaggtcgtcatgttagtattactaggtgatgagtgtttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatga 1182561  T
Q  419 gtgtttttctttcaattgtttggagcgttttcgtaagagagggaataggatttatcagaagttgtcattgccaatgtgatg 499  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1182562 gtgtttttctttcaattgtttggagcgttttcgtaagagggggaataggatttatcagaagttgtcattgccaatgtgatg 1182642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 287 - 486
Target Start/End: Complemental strand, 1237332 - 1237134
Alignment:
Q  287 aatggggttttggatcagataatggagtccttgatatccttttaggtcgtcatgttagtattactaggtgatgagtgtttttaggcctaagatttggtat 386  Q
    |||||||||||||||||||| |||||||||||||||||| | ||||| |  ||||||| ||||||||||| |||||||||||| |||||||||||| |||    
T  1237332 aatggggttttggatcagatgatggagtccttgatatccctataggtagctatgttagaattactaggtggtgagtgtttttatgcctaagatttgttat 1237233  T
Q  387 tgttagtgttctggtgtgttattaggtaatgagtgtttttctttcaattgtttggagcgttttcgtaagagagggaataggatttatcagaagttgtcat 486  Q
    || ||||| |||||||| ||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  1237232 tggtagtgctctggtgttttattaggtgatgagtgtttttctttcaatcttttggagcgttttcgtaagag-ggggataggatttatcagaagttgtcat 1237134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 896466 - 896621
Alignment:
Q  156 ctaatgaatatgtggttaagaaaatgtgataaagtgataagtgctttctaataaggattatacttgtgatgagatttattgatatatggtatattgaata 255  Q
    ||||||| ||| |||||||||||||| |||||||||||||||| | |||||| || |||||||||||||||||||||||||||||| |||| ||||||||    
T  896466 ctaatgagtatttggttaagaaaatgagataaagtgataagtgttctctaatgagtattatacttgtgatgagatttattgatatagggtagattgaata 896565  T
Q  256 cttaggatattgttattgcatattgagtacaaatggggttttggatcagataatgg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  896566 cttaggatattgttattgcatattgagtacaaatggggttttggatgagatgatgg 896621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 365 - 486
Target Start/End: Original strand, 897197 - 897319
Alignment:
Q  365 ttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatgagtgtttttctttcaattgtttggagcgttttcgtaaga-gagggaa 463  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||    
T  897197 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatgagtgtttttctttcaattgtttggagcgttttcgtaagaggggggaa 897296  T
Q  464 taggatttatcagaagttgtcat 486  Q
    |||||||||||||||||||||||    
T  897297 taggatttatcagaagttgtcat 897319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 421
Target Start/End: Original strand, 1193411 - 1193542
Alignment:
Q  290 ggggttttggatcagataatggagtccttgatatccttttaggtcgtcatgttagtattactaggtgatgagtgtttttaggcctaagatttggtattgt 389  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||||| ||| |     
T  1193411 ggggttttggatcagatgatggagtcattgatatccttataggtagttatgttagtattactaggttatgaatgtttttaggcctaagatttgttatagg 1193510  T
Q  390 tagtgttctggtgtgttattaggtaatgagtg 421  Q
    |||| ||||||||||||||||||| |||||||    
T  1193511 tagtattctggtgtgttattaggtgatgagtg 1193542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 89 - 291
Target Start/End: Complemental strand, 1237573 - 1237368
Alignment:
Q  89 gtactgtgccttctttattgcattgtggatgtatatggtttctaagaannnnnnnacttgctctctactaatgaatatgtggttaagaaaatgtgataaa 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||       |||||| |||||   |||| |||||||||||||||||||||||      
T  1237573 gtactgcgccttctttattgcattgtggatgtatatggtttctaagaattattttacttgcactcta---atgagtatgtggttaagaaaatgtgata-- 1237479  T
Q  189 gtgataagtgctttctaataaggat--------tatacttgtgatgagatttattgatatatggtatattgaatacttaggatattgttattgcatattg 280  Q
    |||||| || || |||||| || ||        |||||||||| |||||||| ||||| ||||  ||||||| |||||||||||||||||||||||||||    
T  1237478 gtgataggttctctctaatgagtatatgattattatacttgtgttgagatttgttgatgtatgacatattgagtacttaggatattgttattgcatattg 1237379  T
Q  281 agtacaaatgg 291  Q
    ||| |||||||    
T  1237378 agttcaaatgg 1237368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 896986 - 897106
Alignment:
Q  64 tttgttccaacacttataaaatacagtactgtgccttctttattgcattgtggatgtatatggtttctaagaannnnnnnacttgctctctactaatgaa 163  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||       |||||||||   |||||||     
T  896986 tttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctct---ctaatgag 897082  T
Q  164 tatgtggttaagaaaatgtgataa 187  Q
    ||||||||||||||||||||||||    
T  897083 tatgtggttaagaaaatgtgataa 897106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 64 - 269
Target Start/End: Original strand, 1193157 - 1193367
Alignment:
Q  64 tttgttccaacacttataaaatacagtactgtgccttctttattgcattgtggatgtatatggtttctaagaannnnnnnacttgctctctactaatgaa 163  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| || |||| ||||| ||||||||||       ||||||||||||   ||||     
T  1193157 tttgttccaacacttataaattacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaatttttttacttgctctcta---atgag 1193253  T
Q  164 tatgtggttaagaaaatgtgataaagtgataagtgctttctaataaggat--------tatacttgtgatgagatttattgatatatggtatattgaata 255  Q
    |||||||||||||||||||||| || ||||||||||| |||  | || ||        |||||||||  | |||||| ||||| ||||| ||||||| ||    
T  1193254 tatgtggttaagaaaatgtgatgaaatgataagtgctctcttgtgagtatatgattattatacttgtatttagatttgttgatgtatggcatattgagta 1193353  T
Q  256 cttaggatattgtt 269  Q
    ||||||||||||||    
T  1193354 cttaggatattgtt 1193367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 897123 - 897197
Alignment:
Q  246 atattgaatacttaggatattgttattgcatattgagtacaaatggggttttggatcagataatggagtccttgat 321  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  897123 atattgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgat 897197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 1193090 - 1193290
Alignment:
Q  19 gtgcattcttttt-tgttgaaaaatgttgaaaagaggtactat---------------------tactttgttccaacacttataaaatacagtactgtg 96  Q
    ||||||||||||  |||||||||||||||||||||||||||||                     || |||||||||||||||||||| ||||||| ||||    
T  1193090 gtgcattcttttcatgttgaaaaatgttgaaaagaggtactattattttgttccaagtcccaagtattttgttccaacacttataaattacagtaatgtg 1193189  T
Q  97 ccttctttattgcattgtggatgtatatggtttctaagaannnnnnnacttgctctctactaatgaatatgtggttaagaaaatgtgataaagtgataag 196  Q
    ||||||||||||||| || |||| ||||| ||||||||||       |||||||||   ||||||| |||||||||||||||||||||| || |||||||    
T  1193190 ccttctttattgcatcgtagatgaatatgatttctaagaatttttttacttgctct---ctaatgagtatgtggttaagaaaatgtgatgaaatgataag 1193286  T
Q  197 tgct 200  Q
    ||||    
T  1193287 tgct 1193290  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 793908 - 793865
Alignment:
Q  157 taatgaatatgtggttaagaaaatgtgataaagtgataagtgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  793908 taatgaatatgtggttaagaaaatgtgataaagtgataagtgct 793865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 1176671 - 1176726
Alignment:
Q  81 aaaatacagtactgtgccttctttattgcattgtggatgtatatggtttctaagaa 136  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  1176671 aaaatacataactgtgccttctttattgcattgtggttgtatatggtttctaagaa 1176726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 1183394 - 1183433
Alignment:
Q  396 tctggtgtgttattaggtaatgagtgtttttctttcaatt 435  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  1183394 tctggtgtgttattaggtgataagtgtttttctttcaatt 1183433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 10203758 - 10203883
Alignment:
Q  77 ttataaaatacagtactgtgccttctttattgcattgtggatgtatatggtttctaagaannnnnnnacttgctctctactaatgaatatgtggttaaga 176  Q
    ||||||||||||| | |||||||||||| || ||| || |||| ||||| ||||||||||       |||||||||   ||||||| ||||||||||| |    
T  10203758 ttataaaatacaggaatgtgccttctttttttcatcgtagatgaatatgatttctaagaatttgtttacttgctct---ctaatgagtatgtggttaaaa 10203854  T
Q  177 aaatgtgataaagtgataagtgctttcta 205  Q
    ||||||||| |||||||||||||| ||||    
T  10203855 aaatgtgatgaagtgataagtgctctcta 10203883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 12857196 - 12857260
Alignment:
Q  357 atgagtgtttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatgagtg 421  Q
    |||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  12857196 atgaatgtttttaggcctaagatttgttataggtagtgttctggtgtgttattaggtgatgagtg 12857260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 10203567 - 10203607
Alignment:
Q  22 cattcttttttgttgaaaaatgttgaaaagaggtactatta 62  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  10203567 cattattttttgttgaaaaatgttgaaaagaggtactatta 10203607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 12857477 - 12857529
Alignment:
Q  390 tagtgttctggtgtgttattaggtaatgagtgt-ttttctttcaattgtttgg 441  Q
    ||||| ||| ||||||| |||||| |||||||| |||||||||||||||||||    
T  12857477 tagtgatcttgtgtgttcttaggttatgagtgtcttttctttcaattgtttgg 12857529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 19733 - 19797
Alignment:
Q  357 atgagtgtttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatgagtg 421  Q
    |||| ||||||||| ||||||||||| ||| | |||||||||||||||||||||||| |||||||    
T  19733 atgaatgtttttagacctaagatttgttataggtagtgttctggtgtgttattaggtgatgagtg 19797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 20257234 - 20257183
Alignment:
Q  357 atgagtgtttttaggcctaagatttggtattgttagtgttctggtgtgttat 408  Q
    |||| ||||||||||||||||||||| ||| | ||||||||| |||||||||    
T  20257234 atgaatgtttttaggcctaagatttgttataggtagtgttctagtgtgttat 20257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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