View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17396_low_2 (Length: 239)
Name: NF17396_low_2
Description: NF17396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17396_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 49 - 220
Target Start/End: Complemental strand, 2540439 - 2540268
Alignment:
| Q |
49 |
gactccaaaaatcttatgaccgacattgcatccaatagtcataatcaatctatcaaaaccataaacttttcataatgatattgaatttaaagattaaata |
148 |
Q |
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| T |
2540439 |
gactccaaaaatcttatgactgacattgcatctaatagtcataattaatctatcaaaaccataaacttttcataatgatattgaatttaaagattaaata |
2540340 |
T |
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| Q |
149 |
atagaagagaaaagtttatcataaaaattatagatattaattaaaagggtcatgttaacttgtgctcttaga |
220 |
Q |
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| T |
2540339 |
atagaagagaaaagtttatcataaaaattatagatattaattaaaaaggtcatgttaacttgtacccttaga |
2540268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 1827747 - 1827657
Alignment:
| Q |
104 |
aaaccataaacttttcataatgatattgaatttaaagattaaataatagaagagaaaagtttatcataaaaattatagatattaattaaaa |
194 |
Q |
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| T |
1827747 |
aaaccataaactgctcataaagatacaaaattaaaaaattaaataatagaagagaaaagtttatcatgaaaagtatagatattaattaaaa |
1827657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 1862192 - 1862102
Alignment:
| Q |
104 |
aaaccataaacttttcataatgatattgaatttaaagattaaataatagaagagaaaagtttatcataaaaattatagatattaattaaaa |
194 |
Q |
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| T |
1862192 |
aaaccataaactgctcataaagatacaaaattaaaaaattaaataatagaagagaaaagtttatcatgaaaagtatagatattaattaaaa |
1862102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 2530899 - 2530783
Alignment:
| Q |
70 |
gacattgcatccaatagtcataatcaatctatcaaaaccataaacttttcataatgatattgaatttaaagattaaataatagaagagaaaagtttatca |
169 |
Q |
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| T |
2530899 |
gacattgcattcaatagtcatattc----tatcaaaaccataaacttttcataaaaatact----ttaaagattaaataatagaagcgaaaaggttatca |
2530808 |
T |
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| Q |
170 |
taaaaattatagatattaattaaaa |
194 |
Q |
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| |||| ||||||||||||||||| |
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| T |
2530807 |
tgaaaacgatagatattaattaaaa |
2530783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 2540513 - 2540481
Alignment:
| Q |
16 |
tttttaaaaaatgtgagtttttaaccaatatgc |
48 |
Q |
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| T |
2540513 |
tttttaaaaaatgtgagtttttaaccactatgc |
2540481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 33972582 - 33972611
Alignment:
| Q |
193 |
aagggtcatgttaacttgtgctcttagagc |
222 |
Q |
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| T |
33972582 |
aagggtcatgttaacttgtgctcttagagc |
33972611 |
T |
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