View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17396_low_3 (Length: 227)
Name: NF17396_low_3
Description: NF17396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17396_low_3 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2540785 - 2540560
Alignment:
| Q |
1 |
aatataatttctttaatcattttaaaagccgcaattaaaacttatacatatgattataagtttattgtactaggttttaaaagtgaatgttagatatatt |
100 |
Q |
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| T |
2540785 |
aatataatttctttaatcattttaaaagccgcaattaaaacttataca-atgattataagtttattgtactaggtcttaaaagtgaatgttagatatatt |
2540687 |
T |
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| Q |
101 |
aaatacctgaataagaatatgtttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatc |
200 |
Q |
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| T |
2540686 |
aaatacctgaataagaatatgtttgttggtgcaaggaccgttaaaacttagtttcgacaccataaatgtttttcctactggtataaccagtgttgacatc |
2540587 |
T |
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| Q |
201 |
tctgttgctttacacgcactattccat |
227 |
Q |
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| T |
2540586 |
tctgctgctttacacgcactattccat |
2540560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 2531419 - 2531224
Alignment:
| Q |
32 |
caattaaaacttatacatatgattataagtttattgtactaggttttaaaagtgaatgttagatatattaaatacctgaataagaatatgtttgttggtg |
131 |
Q |
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| T |
2531419 |
caattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtgaatgttagatatattaaatacctgaataagaatatttttgttggtg |
2531320 |
T |
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| Q |
132 |
caaggaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatctctgttgctttacacgcactattccat |
227 |
Q |
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| T |
2531319 |
caaggaccgctaaaacttagtttcgacaccataaatgtttttcctacgggtatgaccagtgttgacatctctgctgctttacacgcactactccat |
2531224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 1827912 - 1827828
Alignment:
| Q |
136 |
gaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatctctgttgctttacacgcact |
220 |
Q |
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| T |
1827912 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcact |
1827828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 1862357 - 1862273
Alignment:
| Q |
136 |
gaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatctctgttgctttacacgcact |
220 |
Q |
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| T |
1862357 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatcccagttgctttacacgcact |
1862273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 2562505 - 2562415
Alignment:
| Q |
130 |
tgcaaggaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatctctgttgctttacacgcact |
220 |
Q |
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| T |
2562505 |
tgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgctgctttacacgcact |
2562415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 2553749 - 2553659
Alignment:
| Q |
130 |
tgcaaggaccgctaaaacttagtttcgacaccataaatatttttcctgctggtataaccagtgttgacatctctgttgctttacacgcact |
220 |
Q |
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| T |
2553749 |
tgcaacgaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgctgctttacacgcact |
2553659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2531462 - 2531423
Alignment:
| Q |
1 |
aatataatttctttaatcattttaaaagccgcaattaaaa |
40 |
Q |
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| T |
2531462 |
aatataatttctttaaatattttaaaagccgcaattaaaa |
2531423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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