View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17396_low_4 (Length: 221)
Name: NF17396_low_4
Description: NF17396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17396_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 6247473 - 6247570
Alignment:
| Q |
50 |
aagagctttcttctaaagatgtggcaatcatgaagaggcgcattgccaatgttcttgaaccagaggaaacagtcttgcaaggcttgagaaggttaaaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
6247473 |
aagagctttcttctaaagatgtggcaatcatgaagaggcgcattgccaatgttcttgaaccagaggaaacagtcttgcaaggtttgagaagattaaaa |
6247570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 6247732 - 6247781
Alignment:
| Q |
148 |
taaaaggcaacggtgatagaaaaacaaagatgtctggtgagactaagatt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6247732 |
taaaaggcaacggtgatagaaaaacaaaaatgtctggtgagactaagatt |
6247781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 1627139 - 1627211
Alignment:
| Q |
50 |
aagagctttcttctaaagatgtggcaatcatgaagaggcgcattgccaatgttcttgaaccagaggaaacagt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1627139 |
aagagctttcttctaaagatgtggcaatcatgaagaggcgcattgcaaatgttcttgaaccagaggaaacagt |
1627211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 1627838 - 1627909
Alignment:
| Q |
121 |
gtcttgcaaggcttgagaaggttaaaataaaaggcaacggtgatagaaaaacaaagatgtctggtgagactaagatt |
197 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
1627838 |
gtcttacaaggcttgagaaggttaaaa-----ggcagcggtgatagaaagacaaaaatgtctggtgagactaagatt |
1627909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University