View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17397_high_6 (Length: 239)
Name: NF17397_high_6
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17397_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 17129725 - 17129821
Alignment:
| Q |
14 |
ttattcttctaccagtttgatataggtctcatgtggtagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
110 |
Q |
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| T |
17129725 |
ttattcttctaccagtttgatataggtctcatgtggcagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
17129821 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 19971855 - 19971957
Alignment:
| Q |
129 |
aatcacttaccatgttatattgaagatcaaaagagacaaaaggttacaggattgggaaacgagacttacaaataaaagattgacattatcaaggaaatct |
228 |
Q |
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| T |
19971855 |
aatcactcaccatgttatattgaagatcaaatgagacaaaaggttgcaggattgggagaagagacttacaaataaaagattaacattatgaaggaaatct |
19971954 |
T |
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| Q |
229 |
act |
231 |
Q |
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||| |
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| T |
19971955 |
act |
19971957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 17165357 - 17165469
Alignment:
| Q |
128 |
taatcacttaccatgttatattgaagatcaaaagagacaaaaggttacaggattgggaaacgagacttacaaataaaa-gattgacattatcaaggaaat |
226 |
Q |
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|||||||| || ||||||||| ||||| ||| | ||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
17165357 |
taatcactcactgtgttatatttaagataaaatgggacaatcggttacatgattgggaaatgagacttacaaataaaaagattgacattatcaaggaaat |
17165456 |
T |
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| Q |
227 |
ctacttaactaat |
239 |
Q |
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| T |
17165457 |
ctacttaactaat |
17165469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 19971705 - 19971795
Alignment:
| Q |
20 |
ttctaccagtttgatataggtctcatgtggtagctaccacatcaccaaaaccaaatccagaatcgatttgatcattatattttcctgattg |
110 |
Q |
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|||||| |||||||||||||||||||||| |||| ||| | || ||| || |||||| |||||||| ||| |||||| ||||||||||| |
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| T |
19971705 |
ttctactagtttgatataggtctcatgtgccagctgccagagtactaaatcccaatccaaaatcgattagataattatactttcctgattg |
19971795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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