View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17397_high_7 (Length: 211)
Name: NF17397_high_7
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17397_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 106966 - 107145
Alignment:
| Q |
17 |
agtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
106966 |
agtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaag |
107065 |
T |
|
| Q |
117 |
gagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107066 |
gagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattcctttg |
107145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 113627 - 113792
Alignment:
| Q |
17 |
agtagttaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacataaaatggaagctgattttcaag |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
113627 |
agtagtaaaatgcaagttcaagaaaacttagatcattattatccttgcaaaccttttgatataattgttccaagacaaaaaatggaagctgattttcaag |
113726 |
T |
|
| Q |
117 |
gagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgt-aatccttttccc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
113727 |
gagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaaatccttttccc |
113792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 142771 - 142686
Alignment:
| Q |
106 |
tgattttcaaggagtaacaaatctctttgtatacccttgtaaatccatgatgttgtgaacatgtaatccttttccctttcagattc |
191 |
Q |
| |
|
||||||||||| || ||||||||||||||| | |||||||||||||||||| | |||||| |||| |||||| ||||||||| |
|
|
| T |
142771 |
tgattttcaagcagcaacaaatctctttgtgtcattttgtaaatccatgatgttttaaacatgaaatcattttcctgttcagattc |
142686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University