View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17397_low_1 (Length: 438)
Name: NF17397_low_1
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17397_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 145 - 412
Target Start/End: Complemental strand, 17130137 - 17129870
Alignment:
| Q |
145 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttcn |
244 |
Q |
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| T |
17130137 |
tttgctagtatttaatttattgcatactggttgtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgttggagttct |
17130038 |
T |
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| Q |
245 |
nnnnnnnnnnnnnnnnnnnnctgatattgatcgtgctcttgctctatatctctcgaccattgttgctttgaaatatgtcatcttagtcctctatcgtcta |
344 |
Q |
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| T |
17130037 |
tttttgtttgcctattttttccgatattgatcgtgcttttactctatatctctcgaccattgttgctttgaaatatgtcatcttagtgctctatcgtcta |
17129938 |
T |
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| Q |
345 |
atgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatt |
412 |
Q |
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| T |
17129937 |
atgaatatattggtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatt |
17129870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 159 - 431
Target Start/End: Complemental strand, 17165709 - 17165435
Alignment:
| Q |
159 |
atttattgcatactggtt--gtgcgactgatagtaatggaggagatgtaactggtctcgatcacttccattgtgcttgtcggagttcnnnnnnnnnnnnn |
256 |
Q |
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| T |
17165709 |
atttattgcatactggttttgtgtgactaatagtaatggagaagacttaaccagtctcgatcacttccattgtgcttgtcggagttctttcttgtttgcc |
17165610 |
T |
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| Q |
257 |
nnnnnnnnctgatattgatcgtgctcttgctctatatctctcgaccattgttgctttgaaatatgtcatcttagtcctctatcgtctaatgaatatattg |
356 |
Q |
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| T |
17165609 |
tattttttctgatattgatcatactttagctctatatctctcaatcattcttgccttgaaatatgtcatcttagtgctctatcgtctaatgaatatattg |
17165510 |
T |
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| Q |
357 |
gtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgatgatgtccatct |
431 |
Q |
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| T |
17165509 |
gtttgaatatttgcatgaacattgttcttgtaacacactaattagttaagtagatttccttgataatgtcaatct |
17165435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 19973526 - 19973443
Alignment:
| Q |
47 |
tctaacatatgcaatgctaagatttaatggttttcaaaggcatgacctttgtttaattttgactctgtcatttagattttcaaa |
130 |
Q |
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| T |
19973526 |
tctaacatatgcaatgctaagatttaatggttttcaaaggcatgagatctgtttcattttgactctgtcatttagattttcaaa |
19973443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Complemental strand, 19972447 - 19972398
Alignment:
| Q |
311 |
tttgaaatatgtcatcttagtcctctatcgtctaatgaatatattggttt |
360 |
Q |
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| T |
19972447 |
tttgaaatatgtcatcttagggctctatcgtctaatgaatatattggttt |
19972398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 19971991 - 19971945
Alignment:
| Q |
371 |
atgaacattgttcttgtaacacactaattagttaagtagatttcctt |
417 |
Q |
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| T |
19971991 |
atgaacattgttcttgtaacactctaattaggtgagtagatttcctt |
19971945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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