View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17397_low_2 (Length: 380)
Name: NF17397_low_2
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17397_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 3637244 - 3637599
Alignment:
| Q |
9 |
gagatgaagatggaacaacatttacatttc-accactttaaaataagtgacgatgaacaattgttttattcacagtacacaaacatcataagaagataaa |
107 |
Q |
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| T |
3637244 |
gagatgaagatggaacaacatgtacatttccaccactttaaaataagtgacgatgaacaattgttttattcacagtacacaaacatcataagaagataaa |
3637343 |
T |
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| Q |
108 |
agtgttctacaatgagaagaaaagacacgcaagagtaaggacacataattgctctttgtatattatagtttcaaatattttgtattctttcctccatgac |
207 |
Q |
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| T |
3637344 |
agtgttctacaataagaagaaaagacacgcaa-agtaaggacacataattgctctttgtgtattatagtttcaaatattttgtattctttcctccatgac |
3637442 |
T |
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| Q |
208 |
taggacaaccaataatccacatcaacgcttagtaacagaattttacataaggatgaatttgagaaacgttttatagagtcgaagtctgaatta---agat |
304 |
Q |
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| T |
3637443 |
taggacaaccaataatccacatcaacgcttagtaacagaattttacataaggatgaatttgagaaacgttttatagagtcgaagtctgaattatagatat |
3637542 |
T |
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| Q |
305 |
atatatattctcgagaatcaaattgagaatttgttacaaagttggcgaccattttag |
361 |
Q |
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| T |
3637543 |
atatatattctcgagaaccaaattgagaatttgttacaaagtcggcgaccattttag |
3637599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 289
Target Start/End: Original strand, 36922529 - 36922569
Alignment:
| Q |
249 |
tttacataaggatgaatttgagaaacgttttatagagtcga |
289 |
Q |
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| T |
36922529 |
tttaaataaggatgattttgagaaacattttatagagtcga |
36922569 |
T |
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