View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17397_low_3 (Length: 367)
Name: NF17397_low_3
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17397_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 5269603 - 5269943
Alignment:
| Q |
13 |
gagaagaagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttc |
112 |
Q |
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| T |
5269603 |
gagaagaagagatttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattttc |
5269702 |
T |
|
| Q |
113 |
cagtttgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagttgat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
5269703 |
cagtgtgggatttgatatgcaaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatttgat |
5269802 |
T |
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| Q |
213 |
taacaaaatagtgatggaggaacatgttcagttcattgcatctgactgcaagatagctacaaactctatttgttcccgttcaccagtcattgcctaaa-t |
311 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5269803 |
taacaaaattatgatggaggaacatgttcaattcattgcatctgactgcaagctagctacaaactctatttgttcccgttcaccagtcattgcctaaagt |
5269902 |
T |
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| Q |
312 |
tgggccttaaattcttagtttttgtgttagatgtttctttt |
352 |
Q |
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| T |
5269903 |
tgggccttaaattcttagtttttgtgttagatgtttctttt |
5269943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 5276053 - 5275808
Alignment:
| Q |
19 |
aagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagttt |
118 |
Q |
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| T |
5276053 |
aagaggtttatctaccttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgt |
5275954 |
T |
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| Q |
119 |
gggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagttgattaacaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
5275953 |
gggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatttgattaacaa |
5275854 |
T |
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| Q |
219 |
aatagtgatggaggaacatgttcagttcattgcatctgactgcaag |
264 |
Q |
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||| ||||||||||||||||||| || ||| |||| || |||||| |
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| T |
5275853 |
aattatgatggaggaacatgttcaatttatttcatcagattgcaag |
5275808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 5272064 - 5271898
Alignment:
| Q |
19 |
aagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagttt |
118 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||| | |
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| T |
5272064 |
aagaggtttatctaccttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgt |
5271965 |
T |
|
| Q |
119 |
gggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
185 |
Q |
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||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
5271964 |
gggatttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5271898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 5251759 - 5251931
Alignment:
| Q |
13 |
gagaagaagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttc |
112 |
Q |
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||||| |||||||||||||||||||||||||| ||| || ||||| ||||| || ||||||||||| | ||| || |||||||||||||||| |||| |
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| T |
5251759 |
gagaacaagaggtttatctaccttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttc |
5251858 |
T |
|
| Q |
113 |
cagtttgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
185 |
Q |
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|||| |||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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| T |
5251859 |
cagtgtgggatttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5251931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 14945035 - 14945163
Alignment:
| Q |
19 |
aagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagttt |
118 |
Q |
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||||| |||||||||| |||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| | |
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| T |
14945035 |
aagagatttatctaccatggtgatggtattggagactattgccctagtttgagacttagagaaagagactttgttatgtcaaggaagaactttccagtat |
14945134 |
T |
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| Q |
119 |
gggatttgatatgcaaagatccttcactt |
147 |
Q |
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|||| |||||||| ||||| |||| |||| |
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| T |
14945135 |
gggacttgatatgaaaagaccctttactt |
14945163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 43109418 - 43109245
Alignment:
| Q |
12 |
agagaagaagaggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaacttt |
111 |
Q |
| |
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|||||| || ||||||||||| ||||| |||||| ||| || ||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||| |
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| T |
43109418 |
agagaataaaaggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaatttt |
43109319 |
T |
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| Q |
112 |
ccagtttgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
185 |
Q |
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|| || |||||||| || |||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||| |
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| T |
43109318 |
cctgtgtgggatttaatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
43109245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 26314456 - 26314296
Alignment:
| Q |
25 |
tttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatt |
124 |
Q |
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|||||||| |||||||||||| ||| || ||||| || ||||| || |||| ||||| |||||||||||||||||||||||| ||||| || ||||| | |
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| T |
26314456 |
tttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggact |
26314357 |
T |
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| Q |
125 |
tgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
185 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |
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| T |
26314356 |
tgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
26314296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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