View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17397_low_6 (Length: 246)

Name: NF17397_low_6
Description: NF17397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17397_low_6
NF17397_low_6
[»] chr7 (10 HSPs)
chr7 (21-181)||(6100995-6101157)
chr7 (65-181)||(6234715-6234831)
chr7 (59-181)||(6089152-6089274)
chr7 (65-181)||(6208297-6208413)
chr7 (65-181)||(6237596-6237712)
chr7 (80-181)||(6106344-6106445)
chr7 (65-181)||(6180714-6180830)
chr7 (65-181)||(6247535-6247651)
chr7 (80-181)||(6213163-6213264)
chr7 (48-171)||(6094506-6094631)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 6100995 - 6101157
Alignment:
Q  21 atagctattgagaggcataatcggtagcatatgatctgatacag--tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgcca 118  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6100995 atagctattgagaggcataatcggtagcatatgatttggtacaaaatccatttgttgacacacgtgtttcaaacgagttgtcagaatgagtttaatgcca 6101094  T
Q  119 ttcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaata 181  Q
    |||  | |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  6101095 ttcgttcttggctgaattccagctttctgaaaatcgatgtacctccaaacatcatccaaaata 6101157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6234715 - 6234831
Alignment:
Q  65 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 164  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||  |||| || ||||| || ||  |||    
T  6234715 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttggatgaattcccaccttctgcaaatcaatatatttcc 6234814  T
Q  165 aaacatcatccaaaata 181  Q
    |||||||||||||||||    
T  6234815 aaacatcatccaaaata 6234831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 6089152 - 6089274
Alignment:
Q  59 atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgt 158  Q
    ||||| ||||| |||||||||||| |||||||||||||||||| ||| | |||||| |||||||| ||||  ||||||||  ||||||  ||||| ||||    
T  6089152 atacaatccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccaccttttccaaatcaatgt 6089251  T
Q  159 acctccaaacatcatccaaaata 181  Q
    |  ||||||||||||||||||||    
T  6089252 atttccaaacatcatccaaaata 6089274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6208297 - 6208413
Alignment:
Q  65 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 164  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||  |||| || ||||| || ||  |||    
T  6208297 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc 6208396  T
Q  165 aaacatcatccaaaata 181  Q
    |||||||||||||||||    
T  6208397 aaacatcatccaaaata 6208413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6237596 - 6237712
Alignment:
Q  65 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 164  Q
    ||||| || ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||  |||| || ||||| || ||  |||    
T  6237596 tccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcactttttgatgaattcccaccttctgcaaatcaatataattcc 6237695  T
Q  165 aaacatcatccaaaata 181  Q
    |||||||||||||||||    
T  6237696 aaacatcatccaaaata 6237712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 6106344 - 6106445
Alignment:
Q  80 acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa 179  Q
    |||||||||||||| ||||| | ||| | ||||||||||||||||||||| ||||||||  |||| || ||||| || ||  ||||||||||||||||||    
T  6106344 acatgtttcaaacgtgttgttagaatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaa 6106443  T
Q  180 ta 181  Q
    ||    
T  6106444 ta 6106445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6180714 - 6180830
Alignment:
Q  65 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 164  Q
    ||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||  |||| |  ||||| || ||  |||    
T  6180714 tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc 6180813  T
Q  165 aaacatcatccaaaata 181  Q
    |||||||||||||||||    
T  6180814 aaacatcatccaaaata 6180830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 6247535 - 6247651
Alignment:
Q  65 tccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctcc 164  Q
    ||||| || ||||| |||||||||||||||||||| | ||| | |||||||||||| |||||||| ||||||||  |||| |  ||||| || ||  |||    
T  6247535 tccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattcccaccttcttcaaatcaatatatttcc 6247634  T
Q  165 aaacatcatccaaaata 181  Q
    |||||||||||||||||    
T  6247635 aaacatcatccaaaata 6247651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 6213163 - 6213264
Alignment:
Q  80 acatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttttgaaaatcgatgtacctccaaacatcatccaaaa 179  Q
    ||||||| |||||||||||||||||| | |||||||||||| |||| ||| ||||||||   ||| || ||||| || ||  ||||||||||||||||||    
T  6213163 acatgttccaaacgagttgtcaaaatcactttaatgccatttacttctggatgaattcccaacttctgcaaatcaatatatttccaaacatcatccaaaa 6213262  T
Q  180 ta 181  Q
    ||    
T  6213263 ta 6213264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 6094506 - 6094631
Alignment:
Q  48 catatgatctg--atacagtccatttgttgacacacatgtttcaaacgagttgtcaaaatgagtttaatgccattcacttttggctgaattccagccttt 145  Q
    |||||||||||  ||||| ||||| |  |||||||||||||||||||||||||| | ||| | ||||||  ||||||| ||| |  |||||||  |||||    
T  6094506 catatgatctggcatacaatccatctcgtgacacacatgtttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccaccttt 6094605  T
Q  146 tgaaaatcgatgtacctccaaacatc 171  Q
    || ||||| |||||  ||||||||||    
T  6094606 tgcaaatcaatgtatttccaaacatc 6094631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University