View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17398_high_1 (Length: 517)
Name: NF17398_high_1
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 507
Target Start/End: Original strand, 2055876 - 2056366
Alignment:
| Q |
16 |
agacacttgttaaggaattaaatagtaaaatatattagaattgnnnnnnngagaggaaaacatgtatttgaatttatgtagtcaaccttttaaaaatatt |
115 |
Q |
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| T |
2055876 |
agacacttgttaaggaatcaaatagtaaaatatattagaattgtttttttgagaggaaaacatgtatt-gaatttatgtagtcagccttttaaaaatatt |
2055974 |
T |
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| Q |
116 |
nnnnnnntgtcattttcaatacaaatttacttttttgtttccttgtaacaattgcttcaaggaacatcaaaaagaaataattaaattattttctttagaa |
215 |
Q |
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| T |
2055975 |
aaaaaattgtcattttcaatacaaatttacttttttgtttccttataataaatgcttcaaggaacatcaaaaagaaataattaaattattttctttagaa |
2056074 |
T |
|
| Q |
216 |
ataaaagtataaaacgattttgatgatatttcaataatgattttattcttatattcaaaagtataatgtttgaagtattttaaatgattaattataattt |
315 |
Q |
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| T |
2056075 |
ataaaagtataaaacgattttgatgatatttcaataatgattttattcttatattcaaaagtataatgtttgaagtattttaaatgattaattataattt |
2056174 |
T |
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| Q |
316 |
tttgatggttttgagttatgagccataagataaataacttcttactattagaattagttaaggttttgttagaatcaagtttcaggtcatggtgttcaag |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2056175 |
tttgatagttttgagttatgagccataagataaataacttcttactattagaattagttgaggttttgttagaatcaagtttcaggtcatggtgttcaag |
2056274 |
T |
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| Q |
416 |
atgtgatgatgaatcaacatgagtatgtatgagtgaatgattaaatatatatgcagctcaaatggatcattgattttggacctattgctcct |
507 |
Q |
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| T |
2056275 |
atgtgatgatgaatcaatatgagtatgtatgagtggatgattaaatatatatgcagctcaaatggatcattgattttggacctattgctcct |
2056366 |
T |
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