View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17398_low_13 (Length: 236)
Name: NF17398_low_13
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 53319230 - 53319440
Alignment:
| Q |
11 |
cattaaccatcaaataaactttattttttgtgtgaatatatcaacccaaactttattttctgttaaccacgtatttaaattattataaaaaagggtaaat |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53319230 |
cattaaacatcaaataaactttattttttgtgtgaatatatcaacccaaactttattttctgttaaccacgtatttaaattattataaaaaagggtaaat |
53319329 |
T |
|
| Q |
111 |
aacataaacaacatacttgtaggcatctacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53319330 |
aacataaacaacatacttgtaggcatctacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcga |
53319429 |
T |
|
| Q |
211 |
acagtatattt |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
53319430 |
acagtatattt |
53319440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 48375449 - 48375322
Alignment:
| Q |
98 |
aaaaagggtaaataacataaacaaca--tactt--gtaggcatctacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagcta |
193 |
Q |
| |
|
|||| |||||||||||||| |||||| || || ||| ||||||||||||||| | ||||||||||||||| |||||||| |||||| ||||| || || |
|
|
| T |
48375449 |
aaaatgggtaaataacatacacaacacataattaagtaagcatctacaagaacttagcttgtatttatttatcgtttctttccatttagctacatagtta |
48375350 |
T |
|
| Q |
194 |
atacaaaaggacttcgaacagtatattt |
221 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
48375349 |
gtacaaaaggacttcgaacactatattt |
48375322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 53422448 - 53422531
Alignment:
| Q |
138 |
tacaagaactcaacttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatattt |
221 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |||| || || ||||||||||||||||||| ||||||| |
|
|
| T |
53422448 |
tacaagagctcaacttgtatttatttatcgtttcttttcatttagctacggagatagtacaaaaggacttcgaacactatattt |
53422531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 26094811 - 26094878
Alignment:
| Q |
151 |
cttgtatttatttattgtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtata |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||| |||| |
|
|
| T |
26094811 |
cttgtatttattaattgtttcttttcatttagctacacagttagtacaaaaggacttcgaacactata |
26094878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 53307259 - 53307346
Alignment:
| Q |
138 |
tacaagaactcaacttgtatttatttatt----gtttcttttcatttatctacacagctaatacaaaaggacttcgaacagtatattt |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||| |||||| ||||||| |
|
|
| T |
53307259 |
tacaagaactaaacttgtatttatttatttatcgtttcttttcatttaattacacggttaatacaaaaggactccgaacattatattt |
53307346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University