View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17398_low_15 (Length: 222)
Name: NF17398_low_15
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 11108751 - 11108560
Alignment:
| Q |
13 |
aatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaa |
112 |
Q |
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| T |
11108751 |
aatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaa |
11108652 |
T |
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| Q |
113 |
agctccacctaaggcttagaatctggtatggcgaatttgtagagagtgtttacttaattgtgtacgtcttgagtccagaggtgtaaactgtc |
204 |
Q |
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| T |
11108651 |
agttccacctaaggctaagaatatggtatggtgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtc |
11108560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 11594910 - 11594724
Alignment:
| Q |
13 |
aatattcggttaggagtacttaccggatttttgtggaagagattgtgg-------atgtttctcatttgcacaggaatggtttttcgggtggaatttgga |
105 |
Q |
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| T |
11594910 |
aatattcggttaggagtgcttaccgggtttgtgtggaagagattgtggtctgtggatgtttctcatttgcacagaaatggtttttggggtggaatttgga |
11594811 |
T |
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| Q |
106 |
atttaaaagctccacctaaggcttagaatctggtatggcgaatttgtagagagtgtttacttaattgtgtacgtcttgagtccagagg |
193 |
Q |
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| T |
11594810 |
atttaaaagttccacctaaggttaaaaatat-gcatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagagg |
11594724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 41469609 - 41469761
Alignment:
| Q |
13 |
aatattcggttaggagtacttaccggatttttgtggaagagattgtggatgtttctcatttgcacaggaatggtttttcgggtggaatttggaatttaaa |
112 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||||| | ||| | || |||||||||| || ||||||| ||||||||||||||| ||||| |
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| T |
41469609 |
aatattcggttaggagtgcttaccgagtttgtgtggaagagatcgcagatatgtcgcatttgcacacaaacggtttttggggtggaatttggaaattaaa |
41469708 |
T |
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| Q |
113 |
agctccacctaaggcttagaatctggtatggcgaatttgtagagagtgtttac |
165 |
Q |
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| T |
41469709 |
agttccacctaaggttaagaatatgttgtggcgagtgtgtagagaatgtttac |
41469761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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