View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17398_low_2 (Length: 396)

Name: NF17398_low_2
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17398_low_2
NF17398_low_2
[»] chr8 (1 HSPs)
chr8 (17-240)||(3915588-3915811)
[»] chr7 (9 HSPs)
chr7 (240-391)||(18568366-18568517)
chr7 (240-391)||(18633460-18633611)
chr7 (240-391)||(18646172-18646323)
chr7 (240-391)||(18648757-18648908)
chr7 (241-383)||(36791587-36791729)
chr7 (242-391)||(18591131-18591280)
chr7 (242-391)||(18620405-18620554)
chr7 (241-391)||(18653440-18653590)
chr7 (240-391)||(18634396-18634548)
[»] chr5 (2 HSPs)
chr5 (241-382)||(7489035-7489176)
chr5 (241-382)||(32284327-32284468)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 3915811 - 3915588
Alignment:
Q  17 aaaattgatacaaatttagtctagaaatcaacatcacattatatagaacgtgtttatagatattattgctatgcattctatttcaatgagtatgaatgta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3915811 aaaattgatacaaatttagtctagaaatcaacatcacattatacagaacgtgtttatagatattattgctatgcattctatttcaatgagtatgaatgta 3915712  T
Q  117 taatttcgatatgagaacatgaatatagaaatatttactctacgagttgatttgataattccaaagaagaaaagatttgaagctttcgtaaagtttcaaa 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3915711 taatttcgatatgagaacatgaatatataaatatttactctacgagttgatttgataattccaaagaagaaaagatttgaagctttcgtacagtttcaaa 3915612  T
Q  217 aggttctaaacataaatttattga 240  Q
    ||||||||||||||||||||||||    
T  3915611 aggttctaaacataaatttattga 3915588  T

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Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 240 - 391
Target Start/End: Original strand, 18568366 - 18568517
Alignment:
Q  240 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 339  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  18568366 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacacttt 18568465  T
Q  340 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18568466 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18568517  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 18633611 - 18633460
Alignment:
Q  240 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 339  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18633611 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18633512  T
Q  340 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18633511 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18633460  T

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Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 18646323 - 18646172
Alignment:
Q  240 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 339  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18646323 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18646224  T
Q  340 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18646223 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18646172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 18648908 - 18648757
Alignment:
Q  240 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 339  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18648908 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18648809  T
Q  340 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18648808 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18648757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 241 - 383
Target Start/End: Original strand, 36791587 - 36791729
Alignment:
Q  241 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 340  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| ||||||| |||||||||| |||     
T  36791587 ggtggattctaaggtgagggccctatcaagtccctcaccgatgaaccatcattatgagcaattggattaatataatccatacatcttattgtacaatttc 36791686  T
Q  341 tacacttgattacaattaccttctccctttcaccaacaatcac 383  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  36791687 tacacttgattacgattaccttctccctttcaccaacaatcac 36791729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 242 - 391
Target Start/End: Original strand, 18591131 - 18591280
Alignment:
Q  242 gtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttttt 341  Q
    |||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||| |    
T  18591131 gtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattttct 18591230  T
Q  342 acacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18591231 acacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 18620554 - 18620405
Alignment:
Q  242 gtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttttt 341  Q
    |||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||| |    
T  18620554 gtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattttct 18620455  T
Q  342 acacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18620454 acacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18620405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 241 - 391
Target Start/End: Complemental strand, 18653590 - 18653440
Alignment:
Q  241 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 340  Q
    ||||||||||||||||||| | ||||||| ||| | |||| | |||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||    
T  18653590 ggtggattctaaggtgagggctctatcaaaccctttaccggtgaaccatcattaagagtaattggattaatataatccatacatcttattgtacactttt 18653491  T
Q  341 tacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  18653490 tacacttgattacaattaccttctccatttcaccaacaatcaccttttgct 18653440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 240 - 391
Target Start/End: Complemental strand, 18634548 - 18634396
Alignment:
Q  240 aggtggattctaagg-tgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactt 338  Q
    ||||||||||||||| ||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||    
T  18634548 aggtggattctaagggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattt 18634449  T
Q  339 tttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 391  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18634448 tctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18634396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 7489176 - 7489035
Alignment:
Q  241 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 340  Q
    |||||||||||||||||||  ||||||||| ||||||| | |  ||||| ||||| |||||||||||||||  ||| ||||||| ||||||||||||||     
T  7489176 ggtggattctaaggtgagggtcctatcaagtccctcactggtggaccattattaagagcaattggattaatcaaatccatacatcttattgtacactttc 7489077  T
Q  341 tacacttgattacaattaccttctccctttcaccaacaatca 382  Q
    |||||| ||||||||||| ||||||||||||||||| |||||    
T  7489076 tacactagattacaattatcttctccctttcaccaataatca 7489035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 32284468 - 32284327
Alignment:
Q  241 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 340  Q
    |||||||||||||||||||| ||||||||| |||| |||  |  ||||| ||||| |||||||||||||||  ||| ||||||| ||||| ||||||||     
T  32284468 ggtggattctaaggtgaggatcctatcaagtcccttacctgtggaccattattaagagcaattggattaatcaaattcatacatcttattatacactttc 32284369  T
Q  341 tacacttgattacaattaccttctccctttcaccaacaatca 382  Q
    | |||| ||| ||||||| |||||||||| ||||||||||||    
T  32284368 tgcactagatcacaattatcttctcccttccaccaacaatca 32284327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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