View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17398_low_4 (Length: 363)
Name: NF17398_low_4
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_4 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 51840615 - 51840259
Alignment:
| Q |
1 |
atagggagtaggtgtgcgggagagaggttgatttgaggttagtttgggttgtcgcctatgtaatggtgaaagtttctcttcttagaatgatccttggttg |
100 |
Q |
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| T |
51840615 |
atagggagtaggtgtgcgggagagaggttgatttgaggttagtttgggttgtcgcctatgtaatggtgaaagtttctcttcttagaatgatccttggttg |
51840516 |
T |
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| Q |
101 |
gaagggggtttgttacgtgatagatttagtcggattttttatttgcatgttgattctaatattacagtcattgagaagaggagattagaatgaggggttg |
200 |
Q |
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| T |
51840515 |
gaagggggtttgttacgtgatagatttagtcggattttttatttgcatgttgattctaatattaccgtcattgagaagaggagattagaatgaggggttg |
51840416 |
T |
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| Q |
201 |
aggatgaagaatggaggtggaagaggctttttgctcggaaggaggaactggttgcaaagtgttgttctttgttggataacattgttttgcaagtttctag |
300 |
Q |
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| T |
51840415 |
agggtgaagaatggaggtggaagaggctttttgctcggaaggaggaactggttgcaaagtgttgttctttgttggataacattgttttgcaagtttctag |
51840316 |
T |
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| Q |
301 |
tgcaaatacttggttttggaaactagatattgtacaaggttactcgataaaaggagt |
357 |
Q |
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| T |
51840315 |
tgcaaatatttggttttggaaactagatattgtacaaggttactcggtaaaaggagt |
51840259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 22950166 - 22950253
Alignment:
| Q |
268 |
tttgttggataacattgttttgcaagtttctagtgcaaatacttggttttggaaactagatattgtacaaggttactcgataaaagga |
355 |
Q |
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| T |
22950166 |
tttgttggataatatttttttgcaggattttattgcgaatacttggttttggaaactggatttagttcatggttactccgtaaaagga |
22950253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 30906173 - 30906239
Alignment:
| Q |
258 |
agtgttgttctttgttggataacattgttttgcaagtttctagtgcaaatacttggttttggaaact |
324 |
Q |
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| T |
30906173 |
agtgttgttctttgttagataatattgttttttaagtttagattgcagatacttggtttttgaaact |
30906239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0635 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 1413 - 1306
Alignment:
| Q |
3 |
agggagtaggtgtgcgggagagaggttgatttgaggttagtttgggttgtcgcctatgtaatggtgaaagtttctcttcttagaatgatccttggttgga |
102 |
Q |
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|||||||||| |||| ||| |||||| |||| || || ||||| |||| | || ||||||||||||||||||||| || || ||||||||| |||| |
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| T |
1413 |
agggagtaggcgtgcctgaggcaggttggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctctttttgaaacgatccttggctgga |
1314 |
T |
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| Q |
103 |
agggggtt |
110 |
Q |
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| T |
1313 |
agggggtt |
1306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 10107371 - 10107478
Alignment:
| Q |
3 |
agggagtaggtgtgcgggagagaggttgatttgaggttagtttgggttgtcgcctatgtaatggtgaaagtttctcttcttagaatgatccttggttgga |
102 |
Q |
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| T |
10107371 |
agggagtaggcgtgcctgaggcaggttggtttgcggctaatttggtgtgtcacgtaggtaatggtgaaagtttctctttttgaaacgatccttggctgga |
10107470 |
T |
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| Q |
103 |
agggggtt |
110 |
Q |
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|||||||| |
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| T |
10107471 |
agggggtt |
10107478 |
T |
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