View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17398_low_5 (Length: 355)
Name: NF17398_low_5
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 125 - 355
Target Start/End: Complemental strand, 36672815 - 36672584
Alignment:
| Q |
125 |
taaaataattgatacaccatttgaataggagagtggacccc-ggtttagggggtggtccagcattttctttttactgtcctacaaggaaactgtatagaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36672815 |
taaaataattgatacaccatttgaataggagagtggacccccggtttagggggtggtccagcattttctttttactgtcctacaaggaaactgtatagaa |
36672716 |
T |
|
| Q |
224 |
ccgtactcgtataacccaatacagtagtatagtaaccgtagccgtagtaacgttgctttcgcagtacttcaaatgcctctgtctgggaaccaatcttata |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36672715 |
ccgtactcgtataacccaatacagtagtatagtaaccgtagccgtagtaacgttgctttcgcagtacttcaaatgcctctgtctgtgaaccaatcttata |
36672616 |
T |
|
| Q |
324 |
cacagaagaatcacagaacaacacaaacaaaa |
355 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
36672615 |
cacagaagaatcacagaacaacaaaaacaaaa |
36672584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 52198033 - 52198103
Alignment:
| Q |
54 |
gaggaaaaatactgtatttccatacggtgtcagtattgtgtctaattttttgtgtctggttatcactgctc |
124 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52198033 |
gaggaaaaataccgtatttctatacggtgtcagtattgtgtctaattttttgtgtctggttatcactgctc |
52198103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 8213340 - 8213407
Alignment:
| Q |
56 |
ggaaaaatactgtatttccatacggtgtcagtattgtgtctaattttttgtgtctggttatcactgct |
123 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
8213340 |
ggaaaaataccatatttctatacggtgtcggtattgtgtctatatttttgtgtttggttatcattgct |
8213407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University