View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17398_low_6 (Length: 313)
Name: NF17398_low_6
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 51920380 - 51920172
Alignment:
| Q |
1 |
accaagtcctctctctcctcgccgccgccaacaaccacggcgacatctccgtcaaaaccacttccctcaaacaagccaaagaccttcttctctccatcga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51920380 |
accaagtcctctctctcctcgccgccgccaacaaccacggcgacatctccgtcaagaccacttccctcaaacaagccaaagaccttcttctctccatcga |
51920281 |
T |
|
| Q |
101 |
cccctctctcgctgcagaccttttcccttatttcctcgaacttcagtcttctcatcaacctctcgttcgcaaattgctcattcagtaattattaactaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51920280 |
cccctctctcgctgcagaccttttcccttatctcctcgaacttcagtcttctcatcaacctctcgttcgcaaattgctcattcagtaattattaactaac |
51920181 |
T |
|
| Q |
201 |
aacttctca |
209 |
Q |
| |
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||||||||| |
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|
| T |
51920180 |
aacttctca |
51920172 |
T |
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