View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17398_low_7 (Length: 310)
Name: NF17398_low_7
Description: NF17398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17398_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 293
Target Start/End: Complemental strand, 11108635 - 11108352
Alignment:
| Q |
10 |
aagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtccgtcgtcttgtgttttttgtcacg |
109 |
Q |
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| T |
11108635 |
aagaatatggtatggtgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtctgtcgtcttgtgttttttgtcacg |
11108536 |
T |
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| Q |
110 |
accctcacgaggactgttatcatctgtttttccactgctgtacagcagttggtatttggagaagtacaggtttatggcaggtgatagaaccgcgtctgca |
209 |
Q |
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| T |
11108535 |
accctcacgcggactgttatcatctgtttttccgctgctgtacagcagttggtatttggagaagtaaaggtttatggcaggtgatagaaccgcttctgca |
11108436 |
T |
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| Q |
210 |
tagatttgatgatgcgtcggaaattatattctatcttttggaacacggtacagcggtgcaatacgaactagtaacaattatgtg |
293 |
Q |
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| T |
11108435 |
tagatttgatgatgcgtcggaaattatattctatcttttggaacatggtacagcggtgcaatacgaactagtaacaattatgtg |
11108352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 11594777 - 11594503
Alignment:
| Q |
21 |
atggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggagtaaactgtccgtcgtcttgtgttttttgtcacgaccctcacgag |
120 |
Q |
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| T |
11594777 |
atggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaagtccagaggag-aaactgtctgttgtcttgtgttttttgtaatgaccctcacgag |
11594679 |
T |
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| Q |
121 |
gactgttatcatctgtttttccactgctgtacagcagttggtatttggagaagtacaggtttatggcaggtgatagaaccgcgtctgcatagatttgatg |
220 |
Q |
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| T |
11594678 |
gactgttatcatatgtttttccactgttgtacagcagttggtatttggagaagtacggttttatggcaggtgatagaaccgcttctgcatagatttgatg |
11594579 |
T |
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| Q |
221 |
atgcgtcggaaattatattctatcttttggaacacggtacagcggtgcaatacgaacta---gtaacaattatgtg |
293 |
Q |
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| T |
11594578 |
atgcgccggaaattatattctatctgttggaacatggtacaacggtgcaatccgaactacttgtaacaattatgtg |
11594503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 41469725 - 41469992
Alignment:
| Q |
10 |
aagaatatggtatggcgagtttgtagagagtgtttacctacttgtgtgcgtttgaa------gtccagaggagtaaactgtccgtcgtcttgtgtttttt |
103 |
Q |
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| T |
41469725 |
aagaatatgttgtggcgagtgtgtagagaatgtttacctactcgcgtgcgtttgaacttgtagtctagaggagttaaatgtccatcgtcgtgtgtatttt |
41469824 |
T |
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| Q |
104 |
gtcacgaccctcacgaggactgttatcatctgtttttccactgctgtacagcagttggtatttggagaagtacaggtttatggcaggtgatagaaccgcg |
203 |
Q |
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| T |
41469825 |
gtaacaaccctcatgaggactgttatcatatgtttttccactgttgtacagcagttgggatttggagaagtacaggtttatggcaggtgatagaaccgct |
41469924 |
T |
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| Q |
204 |
tctgcatagatttgatgatgcgtcggaaattatattctatcttttggaacacggtacagcggtgcaat |
271 |
Q |
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| T |
41469925 |
tctgcataggtttgatgatgcaccggacattattttttatctgttggaacatggttcagcggtgcaat |
41469992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 8941508 - 8941544
Alignment:
| Q |
136 |
tttttccactgctgtacagcagttggtatttggagaa |
172 |
Q |
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| T |
8941508 |
tttttccactgctgtacagcagttggtgtttggagaa |
8941544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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