View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17399_high_14 (Length: 300)

Name: NF17399_high_14
Description: NF17399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17399_high_14
NF17399_high_14
[»] chr6 (17 HSPs)
chr6 (27-274)||(19704916-19705163)
chr6 (27-274)||(18317753-18317998)
chr6 (29-274)||(2629234-2629477)
chr6 (75-274)||(5275727-5275926)
chr6 (27-274)||(12195857-12196102)
chr6 (27-274)||(30034949-30035194)
chr6 (27-274)||(30966925-30967170)
chr6 (28-274)||(26932913-26933156)
chr6 (27-274)||(17011781-17012017)
chr6 (27-268)||(17852275-17852514)
chr6 (27-274)||(22858296-22858534)
chr6 (110-274)||(20526548-20526708)
chr6 (110-196)||(30445318-30445404)
chr6 (110-196)||(30443111-30443195)
chr6 (219-262)||(12158532-12158575)
chr6 (30-66)||(20526744-20526780)
chr6 (221-266)||(30443022-30443069)
[»] chr1 (36 HSPs)
chr1 (27-300)||(31735869-31736139)
chr1 (27-274)||(15295192-15295437)
chr1 (27-274)||(47905958-47906201)
chr1 (76-300)||(27337332-27337556)
chr1 (27-274)||(17324980-17325225)
chr1 (27-274)||(39931764-39932008)
chr1 (75-274)||(24325349-24325548)
chr1 (27-274)||(9463594-9463838)
chr1 (27-244)||(21948535-21948751)
chr1 (78-274)||(48664854-48665050)
chr1 (27-274)||(9459767-9460011)
chr1 (27-274)||(27339478-27339728)
chr1 (78-271)||(2949617-2949810)
chr1 (91-274)||(6115532-6115716)
chr1 (75-274)||(28998643-28998842)
chr1 (75-274)||(29004359-29004558)
chr1 (86-274)||(45693834-45694022)
chr1 (84-274)||(4131690-4131880)
chr1 (88-300)||(6997190-6997395)
chr1 (78-238)||(6996067-6996221)
chr1 (27-164)||(46432072-46432207)
chr1 (161-274)||(46432521-46432634)
chr1 (123-274)||(16561133-16561284)
chr1 (110-196)||(11693580-11693666)
chr1 (75-154)||(2510722-2510801)
chr1 (110-196)||(13785662-13785748)
chr1 (29-142)||(26520463-26520580)
chr1 (110-193)||(14352759-14352842)
chr1 (75-137)||(6115479-6115541)
chr1 (110-193)||(10115572-10115653)
chr1 (146-196)||(32260833-32260883)
chr1 (217-266)||(32260746-32260795)
chr1 (157-203)||(13112047-13112093)
chr1 (219-266)||(11693706-11693753)
chr1 (217-266)||(13785786-13785835)
chr1 (226-266)||(10115466-10115506)
[»] chr5 (25 HSPs)
chr5 (27-300)||(27912195-27912467)
chr5 (27-300)||(18468674-18468944)
chr5 (27-274)||(25803709-25803953)
chr5 (27-276)||(18511556-18511802)
chr5 (27-300)||(18509661-18509931)
chr5 (27-280)||(27910131-27910382)
chr5 (27-274)||(3373383-3373628)
chr5 (27-300)||(26098593-26098865)
chr5 (27-274)||(15551927-15552172)
chr5 (27-256)||(10586549-10586776)
chr5 (27-274)||(26097423-26097670)
chr5 (27-274)||(18596328-18596584)
chr5 (27-196)||(18466453-18466617)
chr5 (93-274)||(21288531-21288713)
chr5 (124-269)||(17415748-17415893)
chr5 (27-196)||(15143262-15143425)
chr5 (172-274)||(6661929-6662031)
chr5 (75-143)||(40221340-40221408)
chr5 (217-274)||(40221284-40221341)
chr5 (222-274)||(18466413-18466465)
chr5 (222-271)||(15143225-15143274)
chr5 (110-152)||(6661594-6661636)
chr5 (27-65)||(40221423-40221461)
chr5 (217-266)||(5779168-5779217)
chr5 (123-196)||(32520241-32520316)
[»] chr4 (29 HSPs)
chr4 (27-298)||(22132741-22133009)
chr4 (27-300)||(14787775-14788045)
chr4 (27-300)||(5100719-5100988)
chr4 (27-274)||(22134972-22135217)
chr4 (75-274)||(56030191-56030390)
chr4 (75-274)||(24347961-24348159)
chr4 (75-274)||(44600227-44600426)
chr4 (27-274)||(17662580-17662824)
chr4 (29-260)||(30136331-30136560)
chr4 (126-274)||(47211158-47211306)
chr4 (35-274)||(38890478-38890699)
chr4 (110-274)||(10112628-10112787)
chr4 (27-169)||(19322547-19322689)
chr4 (110-274)||(9022062-9022225)
chr4 (122-274)||(9863501-9863650)
chr4 (110-196)||(54929094-54929180)
chr4 (27-145)||(53405001-53405118)
chr4 (117-196)||(10979676-10979755)
chr4 (217-274)||(14789512-14789569)
chr4 (175-274)||(19322410-19322510)
chr4 (110-266)||(38209098-38209259)
chr4 (134-193)||(29609838-29609897)
chr4 (145-196)||(5516701-5516752)
chr4 (27-101)||(47211088-47211160)
chr4 (157-196)||(14647175-14647214)
chr4 (227-262)||(29609948-29609983)
chr4 (27-65)||(18709513-18709551)
chr4 (217-266)||(54929220-54929267)
chr4 (220-260)||(5516793-5516833)
[»] scaffold0511 (1 HSPs)
scaffold0511 (29-274)||(1737-1980)
[»] chr7 (41 HSPs)
chr7 (27-300)||(20299131-20299401)
chr7 (27-300)||(7092521-7092792)
chr7 (27-274)||(1849667-1849912)
chr7 (27-274)||(7094768-7095013)
chr7 (27-300)||(28487225-28487496)
chr7 (27-300)||(31156253-31156524)
chr7 (27-300)||(38395962-38396233)
chr7 (27-274)||(1606173-1606417)
chr7 (27-274)||(3035417-3035664)
chr7 (27-274)||(11756927-11757171)
chr7 (27-298)||(7470368-7470643)
chr7 (27-300)||(7349621-7349891)
chr7 (27-271)||(20625739-20625981)
chr7 (27-271)||(20629630-20629872)
chr7 (27-271)||(20642049-20642291)
chr7 (27-274)||(7472326-7472572)
chr7 (27-274)||(28485263-28485509)
chr7 (76-274)||(47865330-47865528)
chr7 (27-274)||(7352000-7352244)
chr7 (27-274)||(18345239-18345484)
chr7 (27-274)||(37412470-37412714)
chr7 (27-274)||(21470637-21470881)
chr7 (75-268)||(24258166-24258358)
chr7 (27-274)||(21989855-21990098)
chr7 (27-274)||(38393685-38393929)
chr7 (27-274)||(42331341-42331591)
chr7 (27-204)||(13099818-13099993)
chr7 (75-196)||(43253914-43254035)
chr7 (27-274)||(3676999-3677227)
chr7 (128-274)||(443328-443474)
chr7 (30-172)||(20297163-20297302)
chr7 (110-273)||(40281824-40281989)
chr7 (110-196)||(12310442-12310528)
chr7 (217-266)||(20297108-20297157)
chr7 (218-266)||(10690684-10690732)
chr7 (149-196)||(12484976-12485023)
chr7 (149-196)||(12506407-12506454)
chr7 (222-268)||(43254023-43254069)
chr7 (101-182)||(10690773-10690854)
chr7 (149-196)||(12657600-12657647)
chr7 (27-65)||(443504-443542)
[»] chr3 (24 HSPs)
chr3 (27-300)||(457926-458197)
chr3 (27-274)||(746424-746668)
chr3 (75-274)||(4104282-4104481)
chr3 (27-300)||(53915836-53916106)
chr3 (27-274)||(25533109-25533351)
chr3 (27-300)||(42991929-42992199)
chr3 (26-274)||(51943044-51943289)
chr3 (27-274)||(10621882-10622125)
chr3 (27-274)||(455575-455820)
chr3 (27-274)||(1313084-1313327)
chr3 (27-274)||(27635968-27636210)
chr3 (79-274)||(41848806-41849001)
chr3 (27-274)||(42989954-42990199)
chr3 (27-271)||(53918004-53918245)
chr3 (110-193)||(11066346-11066429)
chr3 (217-274)||(6561615-6561672)
chr3 (121-193)||(54287487-54287559)
chr3 (126-191)||(53974011-53974077)
chr3 (126-196)||(11072731-11072801)
chr3 (27-66)||(6561689-6561728)
chr3 (217-266)||(53974148-53974197)
chr3 (220-266)||(11072644-11072690)
chr3 (149-196)||(5535882-5535929)
chr3 (27-65)||(41849021-41849059)
[»] scaffold0005 (3 HSPs)
scaffold0005 (27-300)||(51685-51955)
scaffold0005 (217-274)||(50161-50218)
scaffold0005 (157-196)||(170076-170115)
[»] chr2 (18 HSPs)
chr2 (75-300)||(35215983-35216208)
chr2 (75-274)||(42452451-42452650)
chr2 (75-274)||(23452628-23452827)
chr2 (75-274)||(35218364-35218563)
chr2 (75-274)||(42923893-42924092)
chr2 (27-274)||(27583667-27583905)
chr2 (110-266)||(28568584-28568740)
chr2 (110-196)||(15693669-15693755)
chr2 (146-274)||(27136367-27136503)
chr2 (181-269)||(34575608-34575696)
chr2 (110-195)||(7502638-7502723)
chr2 (125-196)||(39286971-39287042)
chr2 (117-196)||(41304806-41304884)
chr2 (75-171)||(34575528-34575617)
chr2 (118-196)||(41303457-41303535)
chr2 (217-266)||(28568346-28568395)
chr2 (220-266)||(15693583-15693629)
chr2 (217-266)||(41303573-41303623)
[»] chr8 (16 HSPs)
chr8 (27-274)||(608472-608720)
chr8 (27-271)||(15808967-15809208)
chr8 (27-274)||(28283567-28283811)
chr8 (27-300)||(41384469-41384738)
chr8 (75-274)||(43529873-43530072)
chr8 (75-274)||(3873752-3873952)
chr8 (27-274)||(41382421-41382666)
chr8 (118-274)||(32339096-32339252)
chr8 (159-274)||(3265635-3265750)
chr8 (27-125)||(181434-181530)
chr8 (110-196)||(11701364-11701447)
chr8 (122-193)||(13986214-13986285)
chr8 (220-266)||(13986328-13986374)
chr8 (222-266)||(11701435-11701479)
chr8 (27-65)||(32339260-32339298)
chr8 (217-266)||(30679208-30679256)
[»] scaffold0154 (1 HSPs)
scaffold0154 (27-274)||(11815-12059)
[»] scaffold0031 (1 HSPs)
scaffold0031 (27-274)||(78885-79131)
[»] scaffold0133 (2 HSPs)
scaffold0133 (128-281)||(4541-4694)
scaffold0133 (27-66)||(4722-4761)
[»] scaffold0468 (2 HSPs)
scaffold0468 (161-274)||(2070-2183)
scaffold0468 (75-133)||(2022-2080)
[»] scaffold1674 (1 HSPs)
scaffold1674 (182-300)||(1-119)
[»] scaffold0008 (1 HSPs)
scaffold0008 (123-193)||(57836-57905)
[»] scaffold0533 (1 HSPs)
scaffold0533 (125-172)||(1971-2018)
[»] scaffold0474 (1 HSPs)
scaffold0474 (217-266)||(10443-10492)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 19704916 - 19705163
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19704916 tcataaatttggaacgaatatcacacttaagatacgtttcttttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 19705015  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  19705016 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgaaacaaatcttttatat 19705115  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19705116 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 19705163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 18317998 - 18317753
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18317998 tcataaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 18317901  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  18317900 tatatttgcatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 18317801  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  18317800 ttttagcaacaatattcttcttccttcaaattttgagtcatactacaa 18317753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 274
Target Start/End: Original strand, 2629234 - 2629477
Alignment:
Q  29 ataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaata 128  Q
    ||||||||||||| ||||  |||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2629234 ataaatttggaacaaatactacactgaagatacgttt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaata 2629331  T
Q  129 tatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattt 228  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||    
T  2629332 tatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattt 2629431  T
Q  229 ttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2629432 ttagcaacaatattcttcttccatcaaattttgagtcatactacaa 2629477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 5275727 - 5275926
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5275727 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 5275826  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  5275827 gtccataaatatattttcagcacaaaatatatttgaaataaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 5275926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 12195857 - 12196102
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12195857 tcataaatttggaacaaataccacactgaagattcgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 12195954  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  12195955 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 12196054  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  12196055 ttttagcaacaatattctccatccatcaatttttgagtcatactacaa 12196102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 30034949 - 30035194
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| ||||||||| |||||||||||||         |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30034949 tcataaatttggaacaaatatcacattgaagatacgttt--ttattttctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaa 30035046  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||       ||||||||||    
T  30035047 tatatttgcattaaatcgttcttcatacgatacaaaaatatatttattgtctataaatatatttttagcacaaaatatatttgaaacaaatcttttatat 30035146  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  30035147 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 30035194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 30967170 - 30966925
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  30967170 tcataaatttggaacaaataccacactgaagattcgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattcgctttcaaaa 30967073  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  30967072 tatatttgcattaaatcgttcttcatacaatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaataaatcttttatat 30966973  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||| ||||||||||||||    
T  30966972 ttttagcaacaatattctccatccatcaaatttggagtcatactacaa 30966925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 28 - 274
Target Start/End: Original strand, 26932913 - 26933156
Alignment:
Q  28 cataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaat 127  Q
    |||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26932913 cataaatttggaacaaataccacactgaagattcgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaat 26933009  T
Q  128 atatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatt 227  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||| ||||       |||||||||||    
T  26933010 atatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataataatattttcagcacaatatatatttgaaacaaatcttttatatt 26933109  T
Q  228 tttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||    
T  26933110 tttagcaacaatattctccatccatcaatttttgagtcatactacaa 26933156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 17012017 - 17011781
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||| ||||| ||||||||||||||          |  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  17012017 tcataaatttggaacgaacatcactctgaagatacgttt--------tttttttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 17011926  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||   ||         |||||||||    
T  17011925 tatatttgcatcaaatcgtccatcatacggtacaaaaatatatttattgtccataaatatattttctacacaaaata---tttaaaacaaacttttatat 17011829  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  17011828 ttttagcaataatattcttcatccatcaaattttaagtcatactacaa 17011781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 17852514 - 17852275
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||| |||||||| |||         ||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  17852514 tcataaatttggaacgaataccacac-gaagatacttttttttttcttctctttcagtgaaataatatttgcatcaaaaatataatattccctttcaaaa 17852416  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||| || ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||  ||||       ||||||||||    
T  17852415 tatatttgcatcaaatagttcttcataaggtacaaaaatatatttattgtccataaatatattttcagcataaaata--tttgaaacaaatcttttatat 17852318  T
Q  227 ttttagca--acaatattcttcttccatcaaattttgagtcata 268  Q
    ||||||||  |||||||||| | | |||||||||||||||||||    
T  17852317 ttttagcaacacaatattctccat-catcaaattttgagtcata 17852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 22858296 - 22858534
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||| |||||||  ||||||||||||||        |||||||| ||||||||||||||||| ||||        |||||||||||||    
T  22858296 tcataaatttggaacgtatatcacgttgaagatacgtttcttttttt-ctccttcaatgaaagaatatttgcatcaaaa--------ttccctttcaaaa 22858386  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||        ||||||||||    
T  22858387 tatatttgcatctaatcttctttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaagtatatttaaaacaaatcttttatat 22858486  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  22858487 ttttattaacaatattcttcatccatcaaattttgagtcatactacaa 22858534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 20526708 - 20526548
Alignment:
Q  110 aatattccctttcaaaa-tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatcttt 208  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| ||     ||||||||||||||||||| ||||||| |||    
T  20526708 aatattctctttcaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatgta-----cataaatatattttcagcataaaatatattt 20526614  T
Q  209 gnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |       ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20526613 gaaacaaatcttttatatttttagcaacaatattcttcacccatcaaattttgagtcatactacaa 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 30445404 - 30445318
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  30445404 aatattcctttttaaaatatatttgcatcaaatcttccttcatatggtacaaaaatatatttattgttcataaatatattttcagca 30445318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 30443195 - 30443111
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||| | ||| |||||| |||||||||||||| ||||| ||||| |||||| |||||||  ||||||||||||||||||||||||    
T  30443195 aatatttcttttaaaaatacatttgcatcaaatcttcctttatacggtacaaacatatatt--ttgtccataaatatattttcagca 30443111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 12158575 - 12158532
Alignment:
Q  219 ttttatatttttagcaacaatattcttcttccatcaaattttga 262  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  12158575 ttttatatttttagcaacaatcttcttcattcatcaaattttga 12158532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 20526780 - 20526744
Alignment:
Q  30 taaatttggaacgaatatcacactgaagatacgtttc 66  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  20526780 taaatttggaacgaatatcacattgaagatgcgtttc 20526744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 30443069 - 30443022
Alignment:
Q  221 ttatatttttagcaacaatattcttcttccatc--aaattttgagtca 266  Q
    ||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  30443069 ttatatttttaacaacaatattcttcatccatcataaattttgagtca 30443022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 31735869 - 31736139
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31735869 tcataaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 31735965  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  31735966 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 31736065  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  31736066 ttttagcaacaatattctccttccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 31736139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 15295192 - 15295437
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||| |||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  15295192 tcataaattaggaacgaataccacactgaagatacattt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattcgctttcaaaa 15295289  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  15295290 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 15295389  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15295390 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 15295437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 47906201 - 47905958
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  47906201 tcataaatttggaacaaataccacactgaagatactttt----tttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaa 47906106  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  47906105 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 47906006  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  47906005 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 47905958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 76 - 300
Target Start/End: Original strand, 27337332 - 27337556
Alignment:
Q  76 tccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattg 175  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27337332 tccttcagttaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattg 27337431  T
Q  176 tccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaa 275  Q
    ||||||||||||||||||||||||||||| ||||       |||| ||||||||||||||||||||||  | |||||||||||| ||||||||||||||     
T  27337432 tccataaatatattttcagcacaaaatatatttgaaacaaatcttatatatttttagcaacaatattccccatccatcaaatttggagtcatactacaac 27337531  T
Q  276 attctcaaccttgactccaaattag 300  Q
    |||||| |||||||||| |||||||    
T  27337532 attctccaccttgactctaaattag 27337556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 17324980 - 17325225
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||||||| ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17324980 tcataaatttggaacgaatatcaccctgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattcccttgcaaaa 17325077  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||       ||||||||||    
T  17325078 tatatttgcatcaaatcgtttttcatacggtacaaaaatatatttattgtccataaatatattttcaactcaaaatatatttgaaacaaatcttttatat 17325177  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  17325178 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 17325225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 39932008 - 39931764
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||||||||  |||||||||||||||||         |||||||| | ||||||||||||||| |||| ||||||||||||||||||||    
T  39932008 tcataaatttggaacgaatactacactgaagatacgttt---ttttttctccttcaataaaagaatatttgcatcaaaagtataatattccctttcaaaa 39931912  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  39931911 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 39931812  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  39931811 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 39931764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 24325548 - 24325349
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24325548 ctccttcagtgaaagaatatttgcatcaaaaatataatattcactttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 24325449  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24325448 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 24325349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 9463594 - 9463838
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||| |||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  9463594 tcataaatttggaacaaataccacaatgaagatacgttt---ttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaa 9463690  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  9463691 tatatttgcattaaattgttcttcatacgatataaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 9463790  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  9463791 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 9463838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 21948535 - 21948751
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         ||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  21948535 tcataaatttggaacgaataccacactgaagatacgttt-tttttttcctccttctgtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 21948633  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  21948634 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 21948733  T
Q  227 ttttagcaacaatattct 244  Q
    ||||||||||||||||||    
T  21948734 ttttagcaacaatattct 21948751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 48665050 - 48664854
Alignment:
Q  78 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 177  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  48665050 cttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatgtgcatcaaatcgttcttcatacggtacaaaaatatatttattgtc 48664951  T
Q  178 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  48664950 cataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 48664854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 9459767 - 9460011
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||| |||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  9459767 tcataaatttggaacaaataccacaatgaagatacgttt---ttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaa 9459863  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||| |||| || ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  9459864 tatatttgcattaaattgttcttcatacggtataaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 9459963  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  9459964 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 9460011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 27339478 - 27339728
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||| |         ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27339478 tcataaatttggaacaaataccacactgaagatacgtt-cttttttttttccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 27339576  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataa----atatattttcagcacaaaatatctttgnnnnnnntctttt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||       ||||||    
T  27339577 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatatattttcagcacaaaatatatttgaaacaaatctttt 27339676  T
Q  223 atatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||| | ||| |||||||| ||||||||||||||    
T  27339677 atatttttagcaacaatattctccatccgtcaaatttggagtcatactacaa 27339728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 2949617 - 2949810
Alignment:
Q  78 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 177  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||    
T  2949617 cttcagtgaaagaatatttgtatcaaaaatataatattccctttcaaaatatatttgcatcaaatcattcttcatacaatacaaaaatatatttattgtc 2949716  T
Q  178 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    ||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2949717 cataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatgaaattttgagtcatacta 2949810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 6115532 - 6115716
Alignment:
Q  91 atatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattt 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6115532 atatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtcattcatacgatacaaaaatatatttattgtccataaatatattt 6115631  T
Q  191 tcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaa-ttttgagtcatactacaa 274  Q
    |||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||    
T  6115632 tcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttttgagtcatcctacaa 6115716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 28998643 - 28998842
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||| |||| ||||||||| ||||||||    
T  28998643 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatatttcttcgtacggtacaaaaatgtatttatt 28998742  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| |||        ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  28998743 gtccataaatatattttcagcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaa 28998842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 29004359 - 29004558
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||| |||| ||||||||| ||||||||    
T  29004359 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatatttcttcgtacggtacaaaaatgtatttatt 29004458  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| |||        ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||    
T  29004459 gtccataaatatattttcagcacaaaatatattttaaacaaatcttttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaa 29004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 86 - 274
Target Start/End: Original strand, 45693834 - 45694022
Alignment:
Q  86 aaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaata 185  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  45693834 aaagaatatttgcataaaaaatatattattctctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaata 45693933  T
Q  186 tattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||| |||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||    
T  45693934 tatttttagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgaatcatagtacaa 45694022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 4131690 - 4131880
Alignment:
Q  84 tgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatattta-ttgtccataa 182  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||    
T  4131690 tgaaagaatatttgcatcaaaa-tataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatttgtccataa 4131788  T
Q  183 atatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||| |||| |||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  4131789 atatatgttcaacacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 4131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 6997395 - 6997190
Alignment:
Q  88 agaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatata 187  Q
    ||||||||||||| ||||||||||||||| |||||||      ||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  6997395 agaatatttgcatcaaaaatataatattctctttcaa------tttgcatcaaatcgttcttcatacggtataaaaatatatttattgtccataa-tata 6997303  T
Q  188 ttttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaacctt 287  Q
    |||| |||||||||||| ||||       ||||||||||||||||||| |||||||| | |||||||||||||||||||||||| || |||||| |||||    
T  6997302 tttttagcacaaaatatatttgaaacaaatcttttatatttttagcaataatattctccatccatcaaattttgagtcatactataacattctccacctt 6997203  T
Q  288 gactccaaattag 300  Q
    ||||| |||||||    
T  6997202 gactctaaattag 6997190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 238
Target Start/End: Complemental strand, 6996221 - 6996067
Alignment:
Q  78 cttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtc 177  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||      ||| ||||||||||| ||||||||| ||||||||||||| |||||||    
T  6996221 cttcagtgaaagaatatttgcaacaaaaatataatattccctttcaa------tttacatcaaatcgttcttcatacggtacaaaaatatatgtattgtc 6996128  T
Q  178 cataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaa 238  Q
    ||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||    
T  6996127 cataaatatattttcagcacaaaatatatttgaaacaagtcttttatatttttagcaacaa 6996067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 46432072 - 46432207
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||| |||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46432072 tcataaatttggaacaaataccacagtgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 46432169  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaa 164  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  46432170 tatatttgcatcaaatcgttcttcatacgatacaaaaa 46432207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 46432521 - 46432634
Alignment:
Q  161 aaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||    
T  46432521 aaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttt 46432620  T
Q  261 gagtcatactacaa 274  Q
    ||||||||||||||    
T  46432621 gagtcatactacaa 46432634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 16561284 - 16561133
Alignment:
Q  123 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttt 222  Q
    ||||||||||||  ||||||  ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||||       | ||||    
T  16561284 aaaatatatttgtttcaaatattccttcatacggtacaaaaagatatttattgtcaataaatatattttcagcacaaaatatatttgaaacaaatatttt 16561185  T
Q  223 atatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||| ||||    
T  16561184 atatttttagcaacaatattcttcatccaacaaattttgaatcatacaacaa 16561133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 11693580 - 11693666
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11693580 aatattccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttattgtccataaatatattttcagca 11693666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 2510722 - 2510801
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatac 154  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  2510722 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgttcttcatac 2510801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 13785662 - 13785748
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  13785662 aatattccttttaaaaatatatttgcatcaaatcttccttcatacgatacaaaaatatatttactatctataaatatattttcagca 13785748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 26520463 - 26520580
Alignment:
Q  29 ataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnn----ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaa 124  Q
    ||||||||||||||||||||||||||||||||| ||||            || |||| |||||||||||||||||| |||||||||||||||||||||||    
T  26520463 ataaatttggaacgaatatcacactgaagatacatttcttttgtttttttcttcttcggtgaaagaatatttgcatcaaaaatataatattccctttcaa 26520562  T
Q  125 aatatatttgcatcaaat 142  Q
    ||||||||||||||||||    
T  26520563 aatatatttgcatcaaat 26520580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 14352842 - 14352759
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  14352842 aatattccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttactattcataaatatattttca 14352759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 6115479 - 6115541
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcat 137  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6115479 ctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcat 6115541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 10115653 - 10115572
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    |||||||| ||| ||||||||||||||||||||  |||||||||||  | ||||  ||||||||||||||||||||||||||||    
T  10115653 aatattccgtttaaaaatatatttgcatcaaatattccttcatacgggataaaa--atatttattgtccataaatatattttca 10115572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 32260883 - 32260833
Alignment:
Q  146 ccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  32260883 ccttcatacggtacaaaaatatatttattgttcataaatatattttcagca 32260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 32260795 - 32260746
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32260795 tcttttatatttttagcaacaatcttcttcatccatcaaattttgagtca 32260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 13112047 - 13112093
Alignment:
Q  157 tacaaaaatatatttattgtccataaatatattttcagcacaaaata 203  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||    
T  13112047 tacaaaaatatatttattgtccatgaatatattttcagcataaaata 13112093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 11693706 - 11693753
Alignment:
Q  219 ttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||||||||    
T  11693706 ttttataattttagcaataatcttcttcatccatcaaattttgagtca 11693753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 13785786 - 13785835
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||| ||||||||||| |||||||||| | |||||||| ||||||||||    
T  13785786 tctttcatatttttagcgacaatattctccatccatcaatttttgagtca 13785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 10115506 - 10115466
Alignment:
Q  226 tttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  10115506 ttttttgcaacaatattcttaatccatcaaattttgagtca 10115466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 27912467 - 27912195
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27912467 tcataaatttggaacaaatatcacactgaagatacgttt-ttttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 27912369  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  27912368 tatatttgcatcaaatcgtttttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 27912269  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  27912268 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 27912195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 18468944 - 18468674
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18468944 tcataaatttggaacaaataccacactgaagatactttt---tattttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 18468848  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  18468847 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 18468748  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  18468747 ttttagcaaaaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 18468674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 25803953 - 25803709
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| ||||| |||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25803953 tcataaatttggaacaaatattacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 25803857  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  25803856 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 25803757  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  25803756 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 25803709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 18511556 - 18511802
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| |||||| |||||||||||         |||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  18511556 tcataaatttggaacgaataccacactaaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatatttcctttcaaaa 18511652  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |       ||||||||||    
T  18511653 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatattcgaaacaaatcttttatat 18511752  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaa 276  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18511753 ttttagcaacaatattcttcatccatcaaattttgagtcatactacaaaa 18511802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 18509661 - 18509931
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||| | ||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18509661 tcataaatttgggatgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 18509757  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |       ||||||||||    
T  18509758 tatatttgcatcaaatcattcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatattcgaaataaatcttttatat 18509857  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||  |||||| |||||||||  |||||||    
T  18509858 ttttagcaacaatattctccatccatcaaattttgagtcatactacaccattctccaccttgactttaaattag 18509931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 280
Target Start/End: Complemental strand, 27910382 - 27910131
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27910382 tcataaatttggaacaaataccacactgaagatactttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 27910285  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  27910284 tatatttgcatcaaatcgttcttcatacaatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 27910185  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattct 280  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||| |||||    
T  27910184 ttttagcaataatattctccatccatcaaattttgagtcatactacaacattct 27910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 3373383 - 3373628
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3373383 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaa 3373480  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  3373481 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 3373580  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||    
T  3373581 ttttagcaacaatattctccatccatcaaattctgagtcatactacaa 3373628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 26098593 - 26098865
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||| |||||||||||| |||| |||||||||||||         |||||||| ||||||||| |||| || |||||||||||||||||||||||||    
T  26098593 tcataaaattggaacgaataccacattgaagatacgttt-ttttatttctccttcaatgaaagaatttttgtatcaaaaatataatattccctttcaaaa 26098691  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  26098692 tatatttgcatcaaatcgttctttatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 26098791  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    ||||||||| |||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  26098792 ttttagcaataatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 26098865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 15552172 - 15551927
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||| ||||||||||||||         |||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  15552172 tcataaatttggaacaaataccacgctgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatgtcatattccctttcaaaa 15552075  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||       ||||||||||    
T  15552074 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatcttcagcacaatatatatttgaaacaaatcttttatat 15551975  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  15551974 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 15551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 256
Target Start/End: Complemental strand, 10586776 - 10586549
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10586776 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 10586679  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  10586678 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 10586579  T
Q  227 ttttagcaacaatattcttcttccatcaaa 256  Q
    |||||||||||||||||  | |||||||||    
T  10586578 ttttagcaacaatattccccatccatcaaa 10586549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 26097670 - 26097423
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctt--tcaa 124  Q
    |||||||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||| ||| ||||  ||||    
T  26097670 tcataaatttggaacgaataccacactgaagatacattt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataacatttccttcttcaa 26097573  T
Q  125 aatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttat 224  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||       | ||||||    
T  26097572 aatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagtacaaaatatatttgaaacaaattttttat 26097473  T
Q  225 atttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26097472 atttttagcaacaatattctccatccatcaaattttgagtcatactacaa 26097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 18596584 - 18596328
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||| |||||||||| || ||||||||||||||| |||||||||    
T  18596584 tcataaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgatagaatatttgtatcaaaaatataatattctctttcaaaa 18596487  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatat-----------ttattgtccataaatatattttcagcacaaaatatctttgnnnnnn 215  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||           |||||||||||||||||||||||| |||||||||| ||||          
T  18596486 tatatttgcatcaaatcgttctttatacggtacaaaaatatatttatggtatatttattgtccataaatatattttcaacacaaaatatatttgaaacaa 18596387  T
Q  216 ntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
     |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  18596386 atcttttatatttttagcaacaatattctccatccatcaaattttgagtcatagtacaa 18596328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 18466617 - 18466453
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  18466617 tcataaatttggaacaaataccacactgaagatactttt-----ttttctcctttagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 18466523  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18466522 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatttttagca 18466453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 274
Target Start/End: Complemental strand, 21288713 - 21288531
Alignment:
Q  93 atttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgata-caaaaatatatttattgtccataaatatatttt 191  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | |||||||||||||||||||||||||||||||    
T  21288713 atttgcatcaaaaatataatattccctttcaaaatatatttgcataaaatcgttcttcatacggtaccgaaaatatatttattgtccataaatatatttt 21288614  T
Q  192 cagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||| |||        |||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  21288613 cagcacaaaatatattttaaacaaatcttttttatttttagcaacaatattctccatccatcaaattttgagttatactacaa 21288531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 17415748 - 17415893
Alignment:
Q  124 aaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttta 223  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||       |||||||    
T  17415748 aaatatatttgcatcaaattttccttcatacagtacaaaaatatatttattgtccataaatatattttcagcaaaaaatatatttgaaacaaatctttta 17415847  T
Q  224 tatttttagcaacaatattcttcttccatcaaattttgagtcatac 269  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  17415848 tatttttagcaacaatattcttcatccatcaaattttgagtcatac 17415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 15143425 - 15143262
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnc-tccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 125  Q
    ||||||||||| |||| ||||||| |||||||||||||||        | | ||||||||||||||||||||||| |||       ||||||||||||||    
T  15143425 tcataaatttgtaacggatatcacgctgaagatacgtttcttttttccccttcttcagtgaaagaatatttgcatcaaa-------tattccctttcaaa 15143333  T
Q  126 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||| ||||    
T  15143332 atatatttgcatcaaatcttccttcatatggtacaaaaatgtatttattgtccataaatatatttttagca 15143262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 6661929 - 6662031
Alignment:
Q  172 attgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||||||| |||||||||| ||||       | |||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  6661929 attgtccataaatatattttcaacacaaaatatatttgaaacaaatattttatatttttagcaacaatattcttcatccatcaagttttaagtcatacta 6662028  T
Q  272 caa 274  Q
    |||    
T  6662029 caa 6662031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 40221408 - 40221340
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatc 143  Q
    ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||    
T  40221408 ctcctgcagtgaaagaatatttgcatcaaaaatataatattccttttcaaaatatatttgaaacaaatc 40221340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 40221341 - 40221284
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||    
T  40221341 tcttttatatttttagcaacaatattcttcatcaattaaattttgagtcatactacaa 40221284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 18466465 - 18466413
Alignment:
Q  222 tatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  18466465 tatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 18466413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 15143274 - 15143225
Alignment:
Q  222 tatatttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  15143274 tatatttttagcaacaatattctccatccatcaaattttgagtcatacta 15143225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 6661594 - 6661636
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcat 152  Q
    |||||||||||||||||||||||| | ||||||| ||||||||    
T  6661594 aatattccctttcaaaatatatttacttcaaatcttccttcat 6661636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 40221461 - 40221423
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgttt 65  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  40221461 tcataaatttagaacggatatcacactgaagatacgttt 40221423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 5779168 - 5779217
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||||||||| ||| |||||| || |||||||||| |||||    
T  5779168 tcttttatatttttagcaataatcttcttcatctatcaaattttaagtca 5779217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 32520316 - 32520241
Alignment:
Q  123 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatata--tttattgtccataaatatattttcagca 196  Q
    ||||||| ||||||||||||  | |||| |||| ||||||||||||  |||| | | |||||||||||||||||||    
T  32520316 aaaatatgtttgcatcaaatttttcttcgtacggtacaaaaatatatttttactctacataaatatattttcagca 32520241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 22132741 - 22133009
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22132741 tcataaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 22132837  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  22132838 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 22132937  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaatt 298  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  22132938 ttttagcaacaatattctccatccatcaaattttgaatcatactacaacattctccaccttgactccaaatt 22133009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 14787775 - 14788045
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14787775 tcataaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 14787871  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||    
T  14787872 tatatttgcatcaaatcgttctttatacggtacaaaaatatatttattgtccataaatatattttcaccacaaaatatatttgaaacaaatcttttatat 14787971  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  14787972 ttttagcaacattattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 14788045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 5100988 - 5100719
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| || | |||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5100988 tcataaatttggaacgaataccagattgaagatacgttt----tttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 5100893  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||        ||||||||||    
T  5100892 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttgttgtccataaatatattttcagcacaaaatatatttaaaacaaatcttttatat 5100793  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  5100792 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 5100719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 22134972 - 22135217
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         ||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  22134972 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgaatcaaaaatataatattccctttcaaaa 22135069  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  22135070 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 22135169  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  22135170 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 22135217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 56030390 - 56030191
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  56030390 ctccttcagtgaaagaatatttgcaccaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatt 56030291  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  56030290 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 56030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 24348159 - 24347961
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  24348159 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 24348060  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| ||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24348059 gtccataaatatattttc-gcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 24347961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 44600227 - 44600426
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44600227 ctccttcagtgaaagaatatttgcatcaaaaatataatattcccttttaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 44600326  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||| |||| ||||       |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||    
T  44600327 gtccataaatatattttcagcacaatatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 44600426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 17662580 - 17662824
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17662580 tcataaatttggaacaaataccacactgaagatactttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 17662676  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||        ||||||||||    
T  17662677 tatatttgcatcaaatcgttcttcgtacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttaaaacaaatcttttatat 17662776  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | ||||||||||||  |||||||||||||    
T  17662777 ttttagcaacaatattctccatccatcaaatttgtagtcatactacaa 17662824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 30136560 - 30136331
Alignment:
Q  29 ataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaata 128  Q
    |||||||| ||||||||||||||||||||||||||||         |||||||| |||||||||||||| || ||||||||||||||| |||| ||||||    
T  30136560 ataaatttagaacgaatatcacactgaagatacgttt--tttttttctccttcaatgaaagaatatttgaatcaaaaatataatattctcttttaaaata 30136463  T
Q  129 tatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattt 228  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||||    
T  30136462 tatttgcatcaaatcgttcttcatacagtacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatattt 30136363  T
Q  229 ttagcaacaatattcttcttccatcaaatttt 260  Q
    |||||||||||||||| | | |||||||||||    
T  30136362 ttagcaacaatattctccattcatcaaatttt 30136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 47211158 - 47211306
Alignment:
Q  126 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttata 225  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||       |||||||||    
T  47211158 atatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttgagcacaaaatatatttgaaacaaatcttttata 47211257  T
Q  226 tttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  47211258 tttttagcaacaatattctccatccatcaaattttaagtcatactacaa 47211306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 35 - 274
Target Start/End: Original strand, 38890478 - 38890699
Alignment:
Q  35 ttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatatt-ccctttcaaaatatattt 133  Q
    ||||||||||||||||| ||||||||| ||||        |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  38890478 ttggaacgaatatcacattgaagatacatttcttttttt-ctcctttagtgaaagaatatttgcatcaaaaatataatatttccctttcaaaatatattt 38890576  T
Q  134 gcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagc 233  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |  |||||                |||||||||||||||||    
T  38890577 gcatcaaatcgtccttcatacaatacaaaaatatatttattgtccataaatatatttgaa--acaaa----------------tcttttatatttttagc 38890658  T
Q  234 aacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||| | |||||||||||||||||||| ||||||    
T  38890659 aacaatattctccatccatcaaattttgagtcatgctacaa 38890699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 10112787 - 10112628
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 209  Q
    ||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10112787 aatattctctttcaaa-tatatttacatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatagtttcagcacaaaatatatttg 10112689  T
Q  210 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
            ||||||||||||||||||||||||||||| | || |||||||| |||||||||||||    
T  10112688 aaac----cttttatatttttagcaacaatattcttcattcaacaaattttaagtcatactacaa 10112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 19322689 - 19322547
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||| |||||||||| ||||||||| ||||        |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19322689 tcataaatttggaatgaatatcacattgaagatacatttcttttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 19322590  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatat 169  Q
    ||||||||||||||||||||||| ||||  |||||||||||||    
T  19322589 tatatttgcatcaaatcgtcctttatacagtacaaaaatatat 19322547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 9022225 - 9022062
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 209  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  9022225 aatattcccttttaaaatatatttgcatcaaatctttcttcatacggtagaaaaatatatttattgt-cataaatatattttcagcaaaaaatatatttg 9022127  T
Q  210 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
           || |||||||||| | ||||||||||  || ||||| ||||||||| |||||||||||    
T  9022126 aaacaaatcatttatattttcaacaacaatatttctcatccataaaattttgaatcatactacaa 9022062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 274
Target Start/End: Complemental strand, 9863650 - 9863501
Alignment:
Q  122 caaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttt 221  Q
    |||||||||||||||||||||| |||||||| |   ||||||||||||||||||| |||||||||||||| |||||||||||| ||||       || ||    
T  9863650 caaaatatatttgcatcaaatcttccttcatgc---acaaaaatatatttattgttcataaatatatttttagcacaaaatatgtttgaaacaaatcatt 9863554  T
Q  222 tatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||| ||||||||  ||| |||| |||||||||||||||| |||||    
T  9863553 tatatttttagtaacaatatatttcatccaacaaattttgagtcatattacaa 9863501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 54929094 - 54929180
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  54929094 aatattcctattaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatattttttgtccataaatatattttcagca 54929180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 53405118 - 53405001
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||| ||||||||         |||||| ||||||||||||||||||| ||||||||||| || ||||||||||    
T  53405118 tcataaatttggaacaaataccacactgaaaatacgttt-ttttttttctcctttagtgaaagaatatttgcatcaaaaatataatttttcctttcaaaa 53405020  T
Q  127 tatatttgcatcaaatcgt 145  Q
    |||||||||||||||||||    
T  53405019 tatatttgcatcaaatcgt 53405001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 10979755 - 10979676
Alignment:
Q  117 cctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||| ||||||||||||||||||||| ||||||||||   |||||||||||||| ||||||||||||||||||||||||    
T  10979755 cctttaaaaatatatttgcatcaaatcttccttcatacagcacaaaaatatatttgttgtccataaatatattttcagca 10979676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 14789512 - 14789569
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  14789512 tcttttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaa 14789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 19322510 - 19322410
Alignment:
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaa-tattcttcttccatcaaattttgagtcatactaca 273  Q
    |||||||||||||||||||| | ||||||| |||        ||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||    
T  19322510 gtccataaatatattttcagtataaaatatatttaaaacaaatcttttatatttttagcaaaaaatattctccatccatcaaattttgagtcatactaca 19322411  T
Q  274 a 274  Q
    |    
T  19322410 a 19322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 38209098 - 38209259
Alignment:
Q  110 aatattccctttcaaa-atatatttgcatcaaatcgtccttcatacgatacaaaaatatatt--tattgtc--cataaatatattttcagcacaaaatat 204  Q
    |||||||| ||||||| |||||||||||||||||| ||||||||||  ||||||||||||||  |||| ||  ||  ||| |  ||  ||||||||||||    
T  38209098 aatattccttttcaaatatatatttgcatcaaatcttccttcatacagtacaaaaatatatttatattttcaacaacaatcttcttgaagcacaaaatat 38209197  T
Q  205 ctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
     |||        ||||||||||||||| |||||||||| ||| |||||||||||||||||||    
T  38209198 atttaaaacaaatcttttatatttttaacaacaatatttttcatccatcaaattttgagtca 38209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 29609838 - 29609897
Alignment:
Q  134 gcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    |||||||||| ||||||||||| |||||||||||||||| | | ||||||||||||||||    
T  29609838 gcatcaaatcttccttcatacggtacaaaaatatatttactcttcataaatatattttca 29609897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 5516701 - 5516752
Alignment:
Q  145 tccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||| ||||    
T  5516701 tccttcatacgataaaaaaatatatttattatctataaatatatttttagca 5516752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 47211088 - 47211160
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcata 101  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||||    
T  47211088 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcata 47211160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 14647175 - 14647214
Alignment:
Q  157 tacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  14647175 tacaaaaatatatttgttgtccatgaatatattttcagca 14647214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 29609948 - 29609983
Alignment:
Q  227 ttttagcaacaatattcttcttccatcaaattttga 262  Q
    |||||||||||||||||||| |||||||||||||||    
T  29609948 ttttagcaacaatattcttcatccatcaaattttga 29609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 18709513 - 18709551
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgttt 65  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  18709513 tcataaatttggaacaaataccacactgaagatacgttt 18709551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 54929220 - 54929267
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||||||||||||||||||||||| |  |||||||||||||| |||||    
T  54929220 tcttttatatttttagcaacaatattat--ttccatcaaattttaagtca 54929267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 5516793 - 5516833
Alignment:
Q  220 tttatatttttagcaacaatattcttcttccatcaaatttt 260  Q
    ||||||||||||||||||||||||| | | |||||||||||    
T  5516793 tttatatttttagcaacaatattctccattcatcaaatttt 5516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 29 - 274
Target Start/End: Complemental strand, 1980 - 1737
Alignment:
Q  29 ataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaata 128  Q
    |||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1980 ataaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaata 1883  T
Q  129 tatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatattt 228  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||    
T  1882 tatttgcatcaaatcttccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatattt 1783  T
Q  229 ttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  1782 ttagcaacaatattcttcttccttcaaattttgagtcatactacaa 1737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 20299401 - 20299131
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||| |||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20299401 tcataaatatggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 20299305  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  20299304 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaataaatcttttatat 20299205  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  20299204 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 20299131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 7092521 - 7092792
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||  ||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7092521 tcataaatttggaacgaataccacactgaagatacaatt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 7092618  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||       ||||||||||    
T  7092619 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatcttcagcacaaaatatatttgaaacaaatcttttatat 7092718  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  7092719 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 7092792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 1849912 - 1849667
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  1849912 tcataaatttggaacaaataccacactgaagattcgttt--tttttttctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaa 1849815  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  1849814 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 1849715  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849714 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 1849667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 7094768 - 7095013
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7094768 tcataaatttggaacgaataccacactgaagatacgttt--ttttttcctccttcagtgaaagaatatttgcataaaaaatataatatttcctttcaaaa 7094865  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  7094866 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 7094965  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  7094966 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 7095013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 28487496 - 28487225
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||| |||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28487496 tcataaatttagaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 28487399  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  28487398 tatatttgcatcaaatcattcttcatacgatacaaaattatatttattgtccataaatatattttcagcacaaaatatatttgaagcaaatcttttatat 28487299  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  28487298 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 28487225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 31156253 - 31156524
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31156253 tcataaatttggaacaaataccacactgaagattcgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 31156350  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  31156351 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 31156450  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||| |||||| |||||||||| |||||||    
T  31156451 ttttagcaacaatattctccatccatcaatttttgagtcatactacaacattctccaccttgactctaaattag 31156524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 38396233 - 38395962
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||| ||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38396233 tcataaatttggaacaaataccacaccgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 38396136  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||       ||||||||||    
T  38396135 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtacataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 38396036  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||| |||||| |||||||||| |||||||    
T  38396035 ttttagcaacaatattctccatccatcaaatttggagtcatactacaacattctccaccttgactctaaattag 38395962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 1606417 - 1606173
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||| |||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1606417 tcataaatttggaacaaataccacactgaagattcgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 1606321  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  1606320 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 1606221  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1606220 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 1606173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 3035664 - 3035417
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| || |||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3035664 tcataaatttggaacaaataccatactgaagatacgttttttttctttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 3035565  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  3035564 tatatttgcatcaaatcattcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 3035465  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  3035464 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 3035417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 11757171 - 11756927
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11757171 tcataaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 11757075  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  11757074 tatatttgcatcaaatagttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 11756975  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  11756974 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 11756927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 298
Target Start/End: Original strand, 7470368 - 7470643
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnn----ctccttcagtgaaagaatatttgcataaaaaatataatattccctttc 122  Q
    |||||||||||||||||||| ||||||||||||||||||             |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  7470368 tcataaatttggaacgaataccacactgaagatacgtttttttttttcttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttc 7470467  T
Q  123 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttt 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||    
T  7470468 aaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatgtttt 7470567  T
Q  223 atatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaatt 298  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  7470568 atatttttagcaataatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaatt 7470643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 7349621 - 7349891
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||||||||||||||||||||||         ||| |||||||||||||||||||| | ||||||||||||||| |||||||||    
T  7349621 tcataaatttggaacaaatatcacactgaagatacgttt---ttttttctcattcagtgaaagaatatttgcctcaaaaatataatattctctttcaaaa 7349717  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  7349718 tatatttgcatcaaatcgttcttcatgcgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 7349817  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||| |||||| |||||||||| |||||||    
T  7349818 ttttagcaacaatattctccatccatcaatttttgagtcatactacaacattctccaccttgactctaaattag 7349891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 20625981 - 20625739
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  20625981 tcataaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaa 20625884  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  20625883 tatatttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 20625784  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  20625783 ttttagcaacaatattctccatccatcaaattttgagtcatacta 20625739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 20629872 - 20629630
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  20629872 tcataaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaa 20629775  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  20629774 tatatttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 20629675  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  20629674 ttttagcaacaatattctccatccatcaaattttgagtcatacta 20629630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 20642291 - 20642049
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  20642291 tcataaatttggaacgaataccacactgaagatacgttt--ttttttgctccttcagtgaaaaaatatttgcatcaaaaatataatattccctttcaaaa 20642194  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  20642193 tatatttgtatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 20642094  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  20642093 ttttagcaacaatattctccatccatcaaattttgagtcatacta 20642049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 7472326 - 7472572
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  7472326 tcataaatttggaacaaataccacactgaagatacgttt-ttttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaa 7472424  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  7472425 tatatttgcatcaaatcgttcttcatatgatacaataatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 7472524  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  7472525 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 7472572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 28485509 - 28485263
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||||| |         ||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  28485509 tcataaatttggaacaaataccacactgaagatacgtgt-tttttttcctccttcggtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 28485411  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||    
T  28485410 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatattttatat 28485311  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  28485310 ttttagcaacaatattcttcatccatcaaattttgaatcatactacaa 28485263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 47865528 - 47865330
Alignment:
Q  76 tccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattg 175  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47865528 tccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattg 47865429  T
Q  176 tccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  47865428 tccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaa 47865330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 7352000 - 7352244
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||||||||||||||||||||||         ||| |||||||||||||||||||| | |||||||||||||||||||||||||    
T  7352000 tcataaatttggaacaaatatcacactgaagatacgttt---ttttttctcattcagtgaaagaatatttgcctcaaaaatataatattccctttcaaaa 7352096  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||       ||||||||||    
T  7352097 tatatttgcatcaaatcgttcttcatgcgatacaaaaatatatttattgtccataaatatattttcagcacaatatatatttgaaacaaatcttttatat 7352196  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||    
T  7352197 ttttagcaacaatattctccatccatcaatttttgagtcatactacaa 7352244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 18345484 - 18345239
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  18345484 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccatttcaaaa 18345387  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||       ||||||||||    
T  18345386 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtcaataaatatatttttagcacaaaatatatttgaaacaaatcttttatat 18345287  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  18345286 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 18345239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 37412470 - 37412714
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  37412470 tcataaatttggaacgaataacacactgaagatacgttt---ttttttctccttcagtggaagaatatttgcatcaaaaatataatattccctttcaaaa 37412566  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||| | ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  37412567 tatatttgcatcaaatcattcttcatacgttacataattatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 37412666  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  37412667 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 37412714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 21470637 - 21470881
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||| ||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21470637 tcataaatttggaacaaataccacaccgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 21470733  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  21470734 tatattcgcatcaaatcgttcttcatacgatataaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 21470833  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||| |||||| |||||||    
T  21470834 ttttagcaacaatattctccatccatcaaatttggagtcaaactacaa 21470881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 268
Target Start/End: Complemental strand, 24258358 - 24258166
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  24258358 ctccttcagtgaaagaatatttacatcaaaaatataatattccctttcaaaatatatttgcatcaa-tcgtccttcatactgtacaaaaatatatttatt 24258260  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcata 268  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24258259 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcata 24258166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 21990098 - 21989855
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||| ||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21990098 tcataaatttggaacgaataccacacagaagatacgttt--ttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 21990001  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||| ||||| ||||       ||||||||||    
T  21990000 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttca--acacaatatatttgaaacaaatcttttatat 21989903  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||||    
T  21989902 ttttagcaacaatattctccatccatcaaattttgggtcatactacaa 21989855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 38393929 - 38393685
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||||||          | |||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  38393929 tcataaatttggaacaaataccacactgaagatacgtt---attttttcaccttcagtgaaagaatatttgcatcaaaaatataacattccctttcaaaa 38393833  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||       |||| |||||    
T  38393832 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaataaattttcagcacaaaatatatttgaaacaaatcttatatat 38393733  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||| || |||||||||||    
T  38393732 ttttagcaacaatattctccatccatcaaatttagaatcatactacaa 38393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 42331341 - 42331591
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnn---ctccttcagtgaaagaatatttgcataaaaaatataatattccctttca 123  Q
    |||||||||||||||||||| |||||| |||||||||||            |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  42331341 tcataaatttggaacgaataccacactaaagatacgtttttttttttctttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttca 42331440  T
Q  124 aaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntctttta 223  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||        |||||||    
T  42331441 aaatatatttgcatcaaatcgttcttcatacggtacaaaaatatacttattgtccataaatatattttcagcacaaaatatatttaaaacaaatctttta 42331540  T
Q  224 tatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||||    
T  42331541 tatttttagcaacaatattcttcattcatcaaattttaagtcatactacaa 42331591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 13099818 - 13099993
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13099818 tcataaatttggaacgaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 13099915  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatat 204  Q
    |||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13099916 tatatttgtatcaaatcgttcttcatacggtacgaaaatatatttattgtccataaatatattttcagcacaaaatat 13099993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 196
Target Start/End: Original strand, 43253914 - 43254035
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43253914 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 43254013  T
Q  175 gtccataaatatattttcagca 196  Q
    ||||||||||||||||| ||||    
T  43254014 gtccataaatatatttttagca 43254035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 3677227 - 3676999
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3677227 tcataaatttggaacgaatatcacactgaagatacgttttttttttctctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 3677128  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||                   |||||||||||||||||| ||||       ||||||||||    
T  3677127 tatatttgcatcaaatcgttcttcatacggtacaaaaatat-------------------attttcagcacaaaatatatttgaaacaaatcttttatat 3677047  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | || ||||||||||||||||||||||||    
T  3677046 ttttagcaacaatattctccatctatcaaattttgagtcatactacaa 3676999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 274
Target Start/End: Complemental strand, 443474 - 443328
Alignment:
Q  128 atatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatt 227  Q
    ||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||    
T  443474 atatttgcatcaaattgttcttcagacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatt 443375  T
Q  228 tttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  443374 tttagcaacaatattctccatccatcaaattttgagtcatactacaa 443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 20297302 - 20297163
Alignment:
Q  30 taaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatat 129  Q
    |||||||||||| |||| ||||||||||||||||||         ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  20297302 taaatttggaacaaataccacactgaagatacgttt---ttttttctccttcggtgaaagaatatttgcatcaaaaatataatattccctttcaaaatat 20297206  T
Q  130 atttgcatcaaatcgtccttcatacgatacaaaaatatattta 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  20297205 atttgcatcaaatcgttcttcatacgatacaaaaatatattta 20297163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 40281824 - 40281989
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 209  Q
    |||||||| ||| |||||||||  | |||||||  || |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  40281824 aatattccttttaaaaatatatccgtatcaaatattctttcatacggtacaaaaatatatttattttccataaatatattttcaacacaaaatatatttg 40281923  T
Q  210 nnnnnnntcttttatatttttagcaacaa--tattcttcttccatcaaattttgagtcatactaca 273  Q
           | ||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  40281924 aaacaaatattttatatttttagcaacaaattcttcttcatccatcaaattttgagtcatactaca 40281989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 12310442 - 12310528
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||| ||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| | ||||| ||| |||| ||||||||    
T  12310442 aatattccttttaaaaatatatttacatcaaatcttccttcatacggtacaaaaatatattaactgtccttaagtataatttcagca 12310528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 20297157 - 20297108
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  20297157 tcttttatatttttagcaacaatattctccatccatcaaattttgagtca 20297108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 10690732 - 10690684
Alignment:
Q  218 cttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||||    
T  10690732 cttttatatttttagcaacaatcttctccctccatcaaattttgagtca 10690684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 12484976 - 12485023
Alignment:
Q  149 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  12484976 tcatacgatacaaaaatatatttgctatccataaatatattttcagca 12485023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 12506407 - 12506454
Alignment:
Q  149 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||||||||||||  | |||||||||||||||||||||    
T  12506407 tcatacgatacaaaaatatatttgctatccataaatatattttcagca 12506454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 43254023 - 43254069
Alignment:
Q  222 tatatttttagcaacaatattcttcttccatcaaattttgagtcata 268  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||    
T  43254023 tatatttttagcaacaatattctccatccatcaaattttgagacata 43254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 10690854 - 10690773
Alignment:
Q  101 aaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataa 182  Q
    |||| ||| |||||||| ||| ||||||||||||||||||||  ||  ||| | | |||||||||||||||||||| |||||    
T  10690854 aaaatataaaatattccttttaaaaatatatttgcatcaaatattctgtcacatggtacaaaaatatatttattgtacataa 10690773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 12657600 - 12657647
Alignment:
Q  149 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||||||||||||  | ||||| |||||||||||||||    
T  12657600 tcatacgatacaaaaatatatttgctatccatgaatatattttcagca 12657647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 443542 - 443504
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgttt 65  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  443542 tcataaatttggaacgaattccacactgaagatacgttt 443504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 458197 - 457926
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  458197 tcataaatttggaacaaataccacactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 458100  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||||||||||    
T  458099 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccacaaatatattttcagcacaaaatatatttgaaacaaatcttttatat 458000  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  457999 ttttagcaacaatattccccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 457926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 746668 - 746424
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  746668 tcataaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 746572  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  746571 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 746472  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  746471 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 4104282 - 4104481
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4104282 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 4104381  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||| ||| ||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4104382 gtccataaatatattttcagcataaagtatatttgaaacaaatcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 4104481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 53915836 - 53916106
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| |||||| |||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  53915836 tcataaatttggaacgaataccacactcaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 53915932  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  53915933 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 53916032  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||| |||||   ||||||||| |||||||    
T  53916033 ttttagcaacaatattctccatccctcaaattttgagtcatactacaacattcttcgccttgactctaaattag 53916106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 25533351 - 25533109
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||| |||| |||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25533351 tcataaatttagaacaaatatcacactgaagatacgttt-----ttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 25533257  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||       ||||||||||    
T  25533256 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcaaaaaatatatttgaaacaaatcttttatat 25533157  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  25533156 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 25533109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 42992199 - 42991929
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||  ||||| |||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42992199 tcataaatttggaattaatattacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 42992103  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||        |||||||||    
T  42992102 tatatttgcatcaaatcgttcttcatacaatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaaccttttatat 42992003  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||| |||||  |||||||||| |||||||    
T  42992002 ttttaacaacaatattctccatccatcaaattttgagtcatactacaacattcttcaccttgactctaaattag 42991929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 51943289 - 51943044
Alignment:
Q  26 atcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 125  Q
    ||||||||||||||||||||| ||||||||||||||||||         |||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  51943289 atcataaatttggaacgaataccacactgaagatacgttt---ttctttctccttcaatgaaagaatatttacatcaaaaatataatattccctttcaaa 51943193  T
Q  126 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttata 225  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||    
T  51943192 atatatttgcatcaaatcattcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttata 51943093  T
Q  226 tttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51943092 tttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 51943044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 10621882 - 10622125
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10621882 tcataaatttggaacaaataccacactgaagatacgttt----tttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 10621977  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||       ||||||||||    
T  10621978 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatatcttcagcacaatatatatttgaaacaaatcttttatat 10622077  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  10622078 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 10622125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 455820 - 455575
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| | ||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  455820 tcataaatttggaacaaataccgcactgaagatacgttt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 455723  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||       ||||||||||    
T  455722 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccacaaatatattttcagcacaaaatatatttgaaacaaatcttttatat 455623  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||    
T  455622 ttttagcaacaatattccccatccatcaaattttgagtcatactacaa 455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 1313327 - 1313084
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||||||||||||||| ||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1313327 tcataaatttggaacgaatatcacactaaagatactttt----tttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 1313232  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| ||||       || |||||||    
T  1313231 tatatttgcatcaaatcgttcttcatacggtacagaaatatatttattgtccataaatatattttcaacacaaaatatatttgaaacaaatcatttatat 1313132  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  1313131 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 1313084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 27635968 - 27636210
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27635968 tcataaatttggaacgaataccacactgaagatacattt-----ttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 27636062  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||    
T  27636063 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaactaatattttatat 27636162  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | ||||||||||||| | |||||||||||    
T  27636163 ttttagcaacaatattctccatccatcaaattttaaatcatactacaa 27636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 79 - 274
Target Start/End: Complemental strand, 41849001 - 41848806
Alignment:
Q  79 ttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtcc 178  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41849001 ttcagttaaagaatatttgcatcaaaaatataatattccttttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtcc 41848902  T
Q  179 ataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  41848901 ataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 41848806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 42990199 - 42989954
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| |||||||||||||| |||         |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42990199 tcataaatttggaacaaataccacactgaagatacattt--tttttttctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaa 42990102  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||       | ||||||||    
T  42990101 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatactttcagcaaaaaatatatttgaaacaaattttttatat 42990002  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||    
T  42990001 ttttagcaacaatattctccatccatcaaattttgagtcatactacaa 42989954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 27 - 271
Target Start/End: Original strand, 53918004 - 53918245
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||| |||||||| ||||||||||||||||||         |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  53918004 tcataaatttgaaacgaataccacactgaagatacgttt---ttttttctccttcaatgaaagaatatttgcatcaaaaatataatattccctttcaaaa 53918100  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||| ||||       ||||||||||    
T  53918101 tatatttgcatcaaatcgttcttcatacggtaaaaaaatatatttattgtccataaatatatgttcaacacaaaatatatttgaaacaaatcttttatat 53918200  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  53918201 ttttagcaacaatattctccatccatcaaattttgagtcatacta 53918245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 11066429 - 11066346
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    ||||||| |||| ||||||||||||||||||||  ||||||||| | || ||||||||||||||||||||||||| ||||||||    
T  11066429 aatattctctttaaaaatatatttgcatcaaatattccttcatatggtaaaaaaatatatttattgtccataaatgtattttca 11066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 6561672 - 6561615
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  6561672 tcttttatatttttagcaacaatattcttcatccatcaaatttcgagtcatactacaa 6561615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 54287487 - 54287559
Alignment:
Q  121 tcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    ||||||||||||||||||||||  ||||||||||  ||||||||| |||||||| ||||||||||||||||||    
T  54287487 tcaaaatatatttgcatcaaatattccttcatacagtacaaaaatgtatttattatccataaatatattttca 54287559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 53974011 - 53974077
Alignment:
Q  126 atatatttgcatcaaatcgtcctt-catacgatacaaaaatatatttattgtccataaatatatttt 191  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||    
T  53974011 atatatttgcatcaaatcttcctttcatacggtacaaaaatatatttattgtctataaatatatttt 53974077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 11072801 - 11072731
Alignment:
Q  126 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||||||| ||| | ||||| ||||||||| ||||| |||||||||||| |||||||||||    
T  11072801 atatatttgcatcaaatcttccgtaatacggtacaaaaatctatttgttgtccataaatgtattttcagca 11072731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 6561728 - 6561689
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttc 66  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6561728 tcataaatttggaacgaatatcacactgaagatacgtttc 6561689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 53974148 - 53974197
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  53974148 tcttttatatttttaacaacaacattcttcatccatcaaattttgagtca 53974197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 11072690 - 11072644
Alignment:
Q  220 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||    
T  11072690 tttatattttttgcaacaatcttcttcatccatcaaattttgagtca 11072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 5535882 - 5535929
Alignment:
Q  149 tcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||||| |||| |||  |||||||||||||||||||||||    
T  5535882 tcatacgatacaaatatatcttttctgtccataaatatattttcagca 5535929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 41849059 - 41849021
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgttt 65  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41849059 tcataaatttggaacaaataccacactgaagatacgttt 41849021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 51955 - 51685
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51955 tcataaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 51859  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||    
T  51858 tatatttgcatcaaatcgttctttatacggtacaaaaatatatttattgtccataaatatattttcaccacaaaatatatttgaaacaaatcttttatat 51759  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  51758 ttttagcaacattattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 51685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 50218 - 50161
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  50218 tcttttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaa 50161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 170115 - 170076
Alignment:
Q  157 tacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  170115 tacaaaaatatatttgttgtccatgaatatattttcagca 170076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 35215983 - 35216208
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35215983 ctccttcagtgaaagaatatctgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttctttatacgatacaaaaatatatttatt 35216082  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35216083 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 35216182  T
Q  275 aattctcaaccttgactccaaattag 300  Q
     |||||| |||||||||| |||||||    
T  35216183 cattctccaccttgactctaaattag 35216208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 42452650 - 42452451
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42452650 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttatt 42452551  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  42452550 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttaagtcatactacaa 42452451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 23452628 - 23452827
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23452628 ctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 23452727  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||| ||||||||||| ||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  23452728 gtccataaatttattttcagcataaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 23452827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 35218364 - 35218563
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  35218364 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgttctttatacgatacaaaaatatatttatt 35218463  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35218464 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 35218563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 42923893 - 42924092
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42923893 ctccttcagtgaaagaatatttgcatcaaaaatataatatttcttttcaaaatatatttgcatcaaatcgttcttcatacggtacaaaaatatatttatt 42923992  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  42923993 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 42924092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 27583667 - 27583905
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||| ||||||| |||||||||| ||||        |||||||||||||||||||||||||| |||       |||||| ||||||||    
T  27583667 tcataaatttggaacggatatcacgctgaagatacatttctttttt--ctccttcagtgaaagaatatttgcatcaaa-------tattccttttcaaaa 27583757  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||  ||||||||| | || ||||||||||||||||| ||||||||||| ||||||||||||||| ||||       ||||||||||    
T  27583758 tatatttgcatcaaatattccttcatatggtataaaaatatatttattgttcataaatatatcttcagcacaaaatatatttgaaacaaatcttttatat 27583857  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  27583858 ttttagcaacaatattcttcatccatcaaaatttgagtcatactacaa 27583905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 110 - 266
Target Start/End: Original strand, 28568584 - 28568740
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttg 209  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||    
T  28568584 aatattccctttcaaaatatatttgcatcaaatcttccttcacacgatacaaaaatatatttattgtccataaatatattttcaaaacaaaatatatttg 28568683  T
Q  210 nnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
           ||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  28568684 aaacaaatcttttatagttttagcaacaatattcttcatctatcaaattttgagtca 28568740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 15693755 - 15693669
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15693755 aatatcccctttaaaaatatatttgcatcaaatcttccttcatacggtacaaaaatatatttattgcccataaatatattttcagca 15693669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 27136367 - 27136503
Alignment:
Q  146 ccttcatacgatacaaaaatatatttattgtccataaatatattt--------tcagcacaaaatatctttgnnnnnnntcttttatatttttagcaaca 237  Q
    |||||||||| |||||||||||||||||| |||||||||||||||        ||| |||||||||| ||||       |||||||||||||||||| ||    
T  27136367 ccttcatacggtacaaaaatatatttattttccataaatatatttatatattttcaacacaaaatatatttgaaacaaatcttttatatttttagcacca 27136466  T
Q  238 atattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27136467 atattcttcatccatcaaattttgagtcatactacaa 27136503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 34575608 - 34575696
Alignment:
Q  181 aaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatac 269  Q
    |||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34575608 aaatatattttcagcacaaaatatatttagaacaaatcttttatatttttagcaacaatattcttcatccatcaaattttgagtcatac 34575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 7502723 - 7502638
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagc 195  Q
    |||||| ||||| ||||||||||||||||||||| ||  |||||| |||||||||||| |||||||| ||||||||||||||||||    
T  7502723 aatatttcctttaaaaatatatttgcatcaaatcttctgtcatacaatacaaaaatatttttattgttcataaatatattttcagc 7502638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 125 - 196
Target Start/End: Complemental strand, 39287042 - 39286971
Alignment:
Q  125 aatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  39287042 aatatatttgcatcaaatcttcattcatatggtacaaaaatatatttattgtccataaatatattttaagca 39286971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 41304806 - 41304884
Alignment:
Q  117 cctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    ||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||| | |||||||||||||| ||||||    
T  41304806 cctttaaaaatatatttgcatcaaatcttccttcatatg-tacaaaaatatatttactatccataaatatattgtcagca 41304884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 34575528 - 34575617
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatattt 171  Q
    |||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||  ||||| ||| | |||||||||||||||    
T  34575528 ctccttcagtgaaagaatatttgcatcaaa-------tattccctttcaaaatatatttgcatcaaattttcctttatatggtacaaaaatatattt 34575617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 41303457 - 41303535
Alignment:
Q  118 ctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||| |||||||||||| ||||| || ||||||| ||| ||||||| |||||||| |||||||||||||||||||||||    
T  41303457 ctttaaaaatatatttgaatcaattcttccttcacacggtacaaaattatatttactgtccataaatatattttcagca 41303535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 28568395 - 28568346
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  28568395 tcttttatatttttaacaacaatattcttcatccatcaaattttgagtca 28568346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 15693629 - 15693583
Alignment:
Q  220 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  15693629 tttatatttttagcaacaatattattcatccatcaaattttaagtca 15693583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 41303573 - 41303623
Alignment:
Q  217 tcttttatatttt-tagcaacaatattcttcttccatcaaattttgagtca 266  Q
    ||||||||||||| |||||||||| |||||| ||||||||||| |||||||    
T  41303573 tcttttatattttttagcaacaatcttcttcatccatcaaattctgagtca 41303623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 608720 - 608472
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtt-tcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 125  Q
    ||||||||||||||| |||||||||| ||||||||||| |         |||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  608720 tcataaatttggaacaaatatcacaccgaagatacgttcttttttttttctccttcagtgaaagaatatttgcataaaatatataatattctctttcaaa 608621  T
Q  126 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttata 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||    
T  608620 atatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttata 608521  T
Q  226 tttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  608520 tttttagcaacaatattcttcttccatcaaattttgagtgatactacaa 608472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 27 - 271
Target Start/End: Complemental strand, 15809208 - 15808967
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| |||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15809208 tcataaatttggaacaaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 15809112  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||       ||||||||||    
T  15809111 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcaacacaaaatatatttgaaacaaatcttttatat 15809012  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatacta 271  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  15809011 ttttagcaacaatattctccatccatcaaattttgagtcatacta 15808967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 28283567 - 28283811
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    ||||||||||||||| ||||| |||||||||||||||||         |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  28283567 tcataaatttggaacaaatattacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattcactttcaaaa 28283663  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||    
T  28283664 tatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatat 28283763  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||    
T  28283764 ttttagcaaaaatattctccatccatcaaattttgagtcatactacaa 28283811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 300
Target Start/End: Complemental strand, 41384738 - 41384469
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||          ||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  41384738 tcataaatttggaacgaataccacactgaagatacgtttttttttt---tccttcaatgaaagaatatttgcataaaaa-tataatattccctttcaaaa 41384643  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || |       ||||||||||    
T  41384642 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagtataaaatatattcgaaacaaatcttttatat 41384543  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctcaaccttgactccaaattag 300  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||| |||||||    
T  41384542 ttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctccaccttgactctaaattag 41384469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 43530072 - 43529873
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttatt 174  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  43530072 ctccttcagtgaaagaatattagcataaaaaatataatattccctttcaaaatatatttgcatcaaatcgttcttcatacaatacaaaaatatatttatt 43529973  T
Q  175 gtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  43529972 gtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 43529873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 3873952 - 3873752
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatatttgcatcaaatcg-tccttcatacgatacaaaaatatatttat 173  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  3873952 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatatttgcatcaaatcgtttcttcatacgatacaaaaatatatttat 3873853  T
Q  174 tgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactaca 273  Q
    ||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3873852 tgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactaca 3873753  T
Q  274 a 274  Q
    |    
T  3873752 a 3873752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 41382666 - 41382421
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         ||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41382666 tcataaatttggaacgaataccacactgaagatacgttt--tttttttctcattcagtgaaagaatatttgcataaaaaatataatatttcctttcaaaa 41382569  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||| || |       ||||||||||    
T  41382568 tatatttgcatcaaatcgttgttcatacggtacaaaaatatatttattgtccataaatatattttcagtataaaatatattcgaaacaaatcttttatat 41382469  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||||    
T  41382468 ttttaacaacaatattctccatccatcaaattttgagtcatactacaa 41382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 32339252 - 32339096
Alignment:
Q  118 ctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnnt 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |    
T  32339252 ctttcaaaatatatttgcatcaaatcgttcttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaat 32339153  T
Q  218 cttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  32339152 cttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 32339096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 3265635 - 3265750
Alignment:
Q  159 caaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatt 258  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||    
T  3265635 caaacatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatt 3265734  T
Q  259 ttgagtcatactacaa 274  Q
    ||||||||||||||||    
T  3265735 ttgagtcatactacaa 3265750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 181530 - 181434
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaa 125  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  181530 tcataaatttggaacgaataccacactgaagatacgttt--ttttcttctcctttagtgaaagaatatttgcatcaaaaatataatattccctttcaaa 181434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 11701364 - 11701447
Alignment:
Q  110 aatattccctttcaaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagca 196  Q
    |||||||||||| ||||||||||| |||||| || |||   ||||| |||||||||||||||| || ||||||||||||||||||||    
T  11701364 aatattccctttaaaaatatatttacatcaattcttcc---atacggtacaaaaatatatttactgaccataaatatattttcagca 11701447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 13986214 - 13986285
Alignment:
Q  122 caaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    |||||||||||||||||||||| || ||||| || ||||||||| |||| | | ||||||||||||||||||    
T  13986214 caaaatatatttgcatcaaatcttctttcatgcggtacaaaaatttattaactatccataaatatattttca 13986285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 13986328 - 13986374
Alignment:
Q  220 tttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||||    
T  13986328 tttatatttttagcaacaatcttcttcatccataaaattttgagtca 13986374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 11701435 - 11701479
Alignment:
Q  222 tatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||    
T  11701435 tatattttcagcaacaatcttcttcgtccatcaaattttgagtca 11701479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 32339298 - 32339260
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgttt 65  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  32339298 tcataaatttggaacaaataccacactgaagatacgttt 32339260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 30679208 - 30679256
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
    |||||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  30679208 tcttttttatttttaccaaca-tattcttcatccatcaaattttgagtca 30679256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 27 - 274
Target Start/End: Original strand, 11815 - 12059
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| ||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11815 tcataaatttggaacgaataccacactgaagatacgttt---ttttttctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 11911  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||       | ||||||||    
T  11912 tatatttgcatcaaatcgttcttcatacggtacaaaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaattttttatat 12011  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||    
T  12012 ttttagcaacaatattctccatccatcaaattttgaatcatactacaa 12059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 79131 - 78885
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttcnnnnnnnnctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaa 126  Q
    |||||||||||||||||||| |||||||||||||| |||         |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  79131 tcataaatttggaacgaataccacactgaagatacattt-tttttttcctccttcagtgaaagaatatttgcatcaaaaatataatattccctttcaaaa 79033  T
Q  127 tatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatat 226  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||||| |||||||||||||||| |||| ||||||| ||||       ||||||||||    
T  79032 tatatttgcatcaaatcgttcttcatacagtacaaaaatatatttattatccataaatatatttttagcagaaaatatatttgagacaaatcttttatat 78933  T
Q  227 ttttagcaacaatattcttcttccatcaaattttgagtcatactacaa 274  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||    
T  78932 ttttagcaacaatattctccatccatcaaattttaagtcatactacaa 78885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 281
Target Start/End: Complemental strand, 4694 - 4541
Alignment:
Q  128 atatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatt 227  Q
    ||||||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||| || |       |||||||||||    
T  4694 atatttgcatcaaattgtccttcatacagtacaaaaatatatatattgtccataaatatattttcagcacgaaatatattcgaaacaaatcttttatatt 4595  T
Q  228 tttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctc 281  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||    
T  4594 tttagcaacaatattcttcatccatcaaattttgagttatactgcaacattctc 4541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 4761 - 4722
Alignment:
Q  27 tcataaatttggaacgaatatcacactgaagatacgtttc 66  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  4761 tcataaatttgaaacgaatatcacactgaagatacgtttc 4722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 2070 - 2183
Alignment:
Q  161 aaaatatatttattgtccataaatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaatttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | |||||||||||||    
T  2070 aaaatatatttattgtccataaatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaatttt 2169  T
Q  261 gagtcatactacaa 274  Q
    ||||||||||||||    
T  2170 gagtcatactacaa 2183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 2022 - 2080
Alignment:
Q  75 ctccttcagtgaaagaatatttgcataaaaaatataatattccctttcaaaatatattt 133  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2022 ctccttcagtgaaagaatatttgcatcaaaaatataatattctctttcaaaatatattt 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 1 - 119
Alignment:
Q  182 aatatattttcagcacaaaatatctttgnnnnnnntcttttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaaattctc 281  Q
    ||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  1 aatatattttcagcacaaaatatatttgaaacaaatcttttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacattctc 100  T
Q  282 aaccttgactccaaattag 300  Q
     |||||||||| |||||||    
T  101 caccttgactctaaattag 119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 57836 - 57905
Alignment:
Q  123 aaaatatatttgcatcaaatcgtccttcatacgatacaaaaatatatttattgtccataaatatattttca 193  Q
    ||||||||||||||||||||  || |||||||| |||||||||||||||||||| |||| |||||||||||    
T  57836 aaaatatatttgcatcaaattttc-ttcatacggtacaaaaatatatttattgttcatacatatattttca 57905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 1971 - 2018
Alignment:
Q  125 aatatatttgcatcaaatcgtccttcatacgatacaaaaatatattta 172  Q
    |||||||||| |||||||  ||||||||| ||||||||||||||||||    
T  1971 aatatatttgtatcaaatattccttcatatgatacaaaaatatattta 2018  T

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Target: scaffold0474 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 10492 - 10443
Alignment:
Q  217 tcttttatatttttagcaacaatattcttcttccatcaaattttgagtca 266  Q
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T  10492 tcttttatatttttaacaacaatcttttttatccatcaaattttgagtca 10443  T

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