View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_10 (Length: 570)

Name: NF1739_high_10
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_10
NF1739_high_10
[»] chr2 (7 HSPs)
chr2 (19-566)||(41505585-41506132)
chr2 (185-282)||(38283866-38283964)
chr2 (185-283)||(12892794-12892892)
chr2 (144-187)||(12115301-12115344)
chr2 (148-245)||(29927745-29927841)
chr2 (236-283)||(36940990-36941037)
chr2 (171-255)||(32979041-32979125)
[»] chr4 (4 HSPs)
chr4 (144-283)||(19401716-19401855)
chr4 (186-283)||(30027506-30027603)
chr4 (144-255)||(21121206-21121316)
chr4 (223-255)||(29010113-29010145)
[»] chr8 (5 HSPs)
chr8 (144-283)||(37165122-37165261)
chr8 (163-283)||(37973368-37973488)
chr8 (155-212)||(31645146-31645203)
chr8 (144-255)||(32703235-32703346)
chr8 (148-208)||(42456893-42456953)
[»] chr3 (5 HSPs)
chr3 (144-283)||(29035336-29035475)
chr3 (144-223)||(29570362-29570441)
chr3 (144-212)||(8029228-8029296)
chr3 (179-255)||(40362036-40362112)
chr3 (223-283)||(45681687-45681747)
[»] chr1 (3 HSPs)
chr1 (144-283)||(44686273-44686413)
chr1 (144-283)||(24122443-24122582)
chr1 (143-283)||(45962222-45962362)
[»] chr7 (2 HSPs)
chr7 (144-255)||(41639701-41639812)
chr7 (144-282)||(5038247-5038385)
[»] chr6 (4 HSPs)
chr6 (144-274)||(34205937-34206067)
chr6 (196-284)||(1063210-1063298)
chr6 (148-255)||(32549432-32549539)
chr6 (144-283)||(4332934-4333073)
[»] chr5 (2 HSPs)
chr5 (144-283)||(30393180-30393319)
chr5 (199-280)||(10400074-10400155)
[»] scaffold0067 (1 HSPs)
scaffold0067 (144-255)||(15301-15409)


Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Original strand, 41505585 - 41506132
Alignment:
Q  19 aataaataatgcaatctcagtataaattttagaagaaattgagaaggggattccaaatcacaaaaggaaaaaacataagaggctaatatgattaatgttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41505585 aataaataatgcaatctcagtataaattttagaagaaattgagaaggggattccaaatcacaaaaggaaaaaacataagaggctaatatggttaatgttg 41505684  T
Q  119 ttcccacatcaaagatacggtagtcaaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  41505685 ttcccacatcaaagatacggtagtcaaaataccaaaataaccttatcggcaattaactaccgatagattttaaccaacggtagttaattgccgaagaaaa 41505784  T
Q  219 atggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaattttcggctaatattgctcnnnnnnntgtgcaaatgagtt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||        ||||||||||||||    
T  41505785 atggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaccaattttcgggtaatattgctaaaaaaaatgtgcaaatgagtt 41505884  T
Q  319 ttccccattcatttggggccaagctacatccaacaccaagcagtttcataagatatacacccctacttgcatcaacttctttttccacccctaaaggtat 418  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41505885 ttccccattcatttggggccaagcgacatccaacaccaagcagtttcataagttatacacccctacttgcatcaacttctttttccacccctaaaggtat 41505984  T
Q  419 atttctagaaaaagcacaatttttgccattctaaataatatgtggtttttataagtgtagggggagaataactttcccctcattacaccttcactgcctt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41505985 atttctagaaaaagcacaatttttgccattctaaataatatgtggtttttataagtgtagggggagaataactttcccctcattacaccttcactgcctt 41506084  T
Q  519 aaagtttggtagcaattcaccttaacatatccctaatattcttcgaca 566  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  41506085 aaagtttggtagcaattcaccttaacatatccctaataatattcgaca 41506132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 38283964 - 38283866
Alignment:
Q  185 attttaaccaacggtagttaattgccgaagaaaaatgg-ggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaatttt 282  Q
    ||||||||||||||||||||| |||||||||||||| | |||||| || ||||||||||||||||||||| |||||  || ||||||||||||||||||    
T  38283964 attttaaccaacggtagttaactgccgaagaaaaattgaggttaagtttgtcattttatggtgtttcttaacctttttaagagtgtaaacaacaatttt 38283866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 283
Target Start/End: Complemental strand, 12892892 - 12892794
Alignment:
Q  185 attttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    ||||||||| ||||||||||| || ||| ||||| ||||||||||||  |||||| || |||||||||| | ||    |||||||||||||||||||||    
T  12892892 attttaaccgacggtagttaactgtcgacgaaaattggggttaaatttatcatttcatagtgtttcttaactttctgcaaagtgtaaacaacaattttc 12892794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 12115344 - 12115301
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagatt 187  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  12115344 aaaataccaaaataacctcatcggcagttaacggccgatggatt 12115301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 29927745 - 29927841
Alignment:
Q  148 taccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggt 245  Q
    |||||| ||||||||||||||| ||||| || ||| |||||||||| ||| ||||||| | |||| ||||  ||||||||||||  |||||| |||||    
T  29927745 taccaatataacctcatcggcagttaactgctgatggattttaaccgacgatagttaact-ccgatgaaatttggggttaaatttatcatttcatggt 29927841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 36941037 - 36940990
Alignment:
Q  236 attttatggtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||||||||||| |||||||| |||| |||||||||| ||||||||    
T  36941037 attttatggtgttttttagccttcacaagagtgtaaacatcaattttc 36940990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 32979041 - 32979125
Alignment:
Q  171 ttaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagc 255  Q
    ||||| ||||||  ||||||| | || |||||||||||  |||| ||  ||||||||||||  |||||||||| |||||||||||    
T  32979041 ttaactgccgatgaattttaatcgacagtagttaattgttgaaggaatttggggttaaatttatcattttatgatgtttcttagc 32979125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 19401716 - 19401855
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||  ||||||||||    
T  19401716 aaaataccaaaataacctcatcgacaattaactgccgatagattttaaccgacggtagttaactgccgaagaaaattggggttaaatttatcattttatg 19401815  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||||||||||||||||| ||||||||||  |||||||    
T  19401816 gtgtttcttagcctttacaagagtgtaaacattaattttc 19401855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 283
Target Start/End: Original strand, 30027506 - 30027603
Alignment:
Q  186 ttttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||||| || |||||||| |  |||| |||| || ||||||||||||||||||||||| ||||||||||||   || |||||||| ||||||||||    
T  30027506 ttttaaccgacagtagttaactatcgaaaaaaattgaggttaaattcgtcattttatggtatttcttagccttcgaaagagtgtaaagaacaattttc 30027603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 21121206 - 21121316
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagatttt-aaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttat 242  Q
    |||||||||||||||||||||| | | |||||  |||||  ||||| |||| || |||||||| || |||   ||| ||||||||||||  | |||||||    
T  21121206 aaaataccaaaataacctcatcagtagttaactaccgatgaattttaaaccgacagtagttaactgtcgatagaaattggggttaaatt--ttattttat 21121303  T
Q  243 ggtgtttcttagc 255  Q
    |||||||||||||    
T  21121304 ggtgtttcttagc 21121316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 29010113 - 29010145
Alignment:
Q  223 ggttaaattcgtcattttatggtgtttcttagc 255  Q
    ||||||||| |||||||||||||||||||||||    
T  29010113 ggttaaatttgtcattttatggtgtttcttagc 29010145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 37165261 - 37165122
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    |||||| |||||||| |||||||||||||||| | |||| | ||||||||  ||||| |||| ||||||||||||||||| ||||||| |||||||||||    
T  37165261 aaaatatcaaaataatctcatcggcaattaactgacgatgggttttaaccggcggtaattaactgccgaagaaaaatgggattaaatttgtcattttatg 37165162  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
     |||||||||||||| |||| |||||||||| ||||||||    
T  37165161 atgtttcttagccttcacaagagtgtaaacagcaattttc 37165122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 37973488 - 37973368
Alignment:
Q  163 atcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagcctttaca 262  Q
    ||||||| ||||| | ||||  ||||||||| |||||||| || ||| |||||||| || |||||||||  ||||||||| || ||||| ||||||||||    
T  37973488 atcggcagttaactgtcgatgaattttaaccgacggtagtcaactgctgaagaaaattgaggttaaatttatcattttatagtatttctgagcctttaca 37973389  T
Q  263 aaagtgtaaacaacaattttc 283  Q
    | |||||||||||||||||||    
T  37973388 agagtgtaaacaacaattttc 37973368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 31645146 - 31645203
Alignment:
Q  155 ataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccga 212  Q
    ||||||||||||||| ||||| |||||| |||||||||| |||| |||||| ||||||    
T  31645146 ataacctcatcggcacttaactgccgatggattttaaccgacggcagttaactgccga 31645203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 32703235 - 32703346
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||| |||||| | ||||||| | ||||| ||||||||||||||||| || |||||||| || | |  |||| ||| ||||||||  |||||| |||    
T  32703235 aaaatactaaaatagcatcatcggtagttaactgccgatagattttaaccgacagtagttaactgtcaataaaaattggcgttaaatttatcatttcatg 32703334  T
Q  244 gtgtttcttagc 255  Q
     | |||||||||    
T  32703335 atttttcttagc 32703346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 42456953 - 42456893
Alignment:
Q  148 taccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattg 208  Q
    |||||| ||||||||||||| ||||| | |  ||| |||||||||| ||||||||||||||    
T  42456953 taccaatataacctcatcggtaattagctgttgatggattttaaccgacggtagttaattg 42456893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 29035336 - 29035475
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||||||||||| || ||| | | ||||| || ||| |||||||||| ||||||||||| || |||| |||| ||   |||||||| |||||||||     
T  29035336 aaaataccaaaataatcttatcagtagttaactgctgatggattttaaccgacggtagttaaatgtcgaaaaaaattgaaattaaattcatcattttatt 29035435  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||| |||||||| ||||||||||||||||| ||||||    
T  29035436 gtgttttttagccttcacaaaagtgtaaacaacgattttc 29035475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 29570362 - 29570441
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggg 223  Q
    |||||||||||||||||||||||||| ||||| || ||| ||||||||||  |||||||||  |||||||||||| ||||    
T  29570362 aaaataccaaaataacctcatcggcagttaactgctgatggattttaaccggcggtagttagctgccgaagaaaattggg 29570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 8029296 - 8029228
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccga 212  Q
    |||||||||| ||||||||||||||||||||| ||||||   |||||||| |||  |||||| ||||||    
T  8029296 aaaataccaatataacctcatcggcaattaactgccgatgagttttaaccgacgacagttaactgccga 8029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 40362036 - 40362112
Alignment:
Q  179 cgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagc 255  Q
    |||| |||||||||| ||||||||||| |  | | ||||  ||||||||||||  ||||||||||||||||||||||    
T  40362036 cgatggattttaaccgacggtagttaactatcaatgaaatttggggttaaatttttcattttatggtgtttcttagc 40362112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 45681747 - 45681687
Alignment:
Q  223 ggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    ||||||||| |||||||||| || ||| |||||||| |||| | |||||||||||||||||    
T  45681747 ggttaaatttgtcattttatagtattttttagccttcacaagaatgtaaacaacaattttc 45681687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 44686273 - 44686413
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    |||||||||||||||  |||||| || ||||| ||||||  |||||||||    ||| |||| |||||||||||| ||| |||||||| || ||||||||    
T  44686273 aaaataccaaaataatttcatcgacagttaactgccgatgaattttaaccggatgtaattaactgccgaagaaaattggagttaaatttgttattttatg 44686372  T
Q  244 gtg-tttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    ||| ||| |||||||| |||| |||||||||||||||||||    
T  44686373 gtgtttttttagccttcacaagagtgtaaacaacaattttc 44686413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 24122443 - 24122582
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||||||||||||||||||| || |||||  | |||  || |||||| | | ||||||| |  | | ||||| || | ||||||| || ||||||||    
T  24122443 aaaataccaaaataacctcatcgacagttaactactgatgaatgttaaccgatgatagttaaatatcaatgaaaattgagattaaatttgttattttatg 24122542  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||||||| ||||   ||||||||||||| ||||||||    
T  24122543 gtgtttcttaaccttatgaaaagtgtaaacatcaattttc 24122582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 45962222 - 45962362
Alignment:
Q  143 caaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttat 242  Q
    ||||||| ||||||||||||||||  ||||||| ||||||| |||||||||  |||| ||||| |||| | |||||  |  ||||||||   ||||| |     
T  45962222 caaaatagcaaaataacctcatcgataattaactgccgataaattttaaccggcggtcgttaactgcccatgaaaatcgaagttaaatttaccatttcac 45962321  T
Q  243 ggtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    | ||||||||| | ||    |||||||||||||||||||||    
T  45962322 gatgtttcttaactttgtgcaaagtgtaaacaacaattttc 45962362  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 41639701 - 41639812
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||||||||||| |||||||||| ||||||| |||| || ||||||| | ||||||||| || ||| | ||| |||||||||||| |||||||||||    
T  41639701 aaaataccaaaataatctcatcggcagttaacggtcgatcgagtttaaccgatggtagttaactgtcgatggaaattggggttaaatttgtcattttatg 41639800  T
Q  244 gtgtttcttagc 255  Q
    || ||| |||||    
T  41639801 gtcttttttagc 41639812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 282
Target Start/End: Complemental strand, 5038385 - 5038247
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||| |||||||| ||||||||| ||||| | |||| ||||||||||   ||||||||| || ||| |  || ||  ||||||||  |||||| |||    
T  5038385 aaaatactaaaataacttcatcggcagttaactgacgatggattttaacccgtggtagttaactgtcgatggtaattgaagttaaatttttcatttcatg 5038286  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaatttt 282  Q
    |||||||||| | ||    ||||||||||||||||||||    
T  5038285 gtgtttcttaactttgtgcaaagtgtaaacaacaatttt 5038247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 34205937 - 34206067
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    |||||| ||| ||||| ||||||||| ||| | | |||| |||||||| || ||||||||||| ||||||||||||| ||| ||| || |||||||||||    
T  34205937 aaaatatcaatataacatcatcggcagttacctgtcgatggattttaatcagcggtagttaatcgccgaagaaaaattgggataattttgtcattttatg 34206036  T
Q  244 gtgtttcttagcctttacaaaagtgtaaaca 274  Q
     ||||||||| ||||  ||||| ||||||||    
T  34206037 atgtttcttaaccttctcaaaaatgtaaaca 34206067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 1063210 - 1063298
Alignment:
Q  196 cggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaattttcg 284  Q
    |||||||||| || ||||||||| | | |||||||||||||||||||||||||||||||| || |||  |||| |||||||||||||||    
T  1063210 cggtagttaactgtcgaagaaaattagagttaaattcgtcattttatggtgtttcttagctttcacatgagtgcaaacaacaattttcg 1063298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 32549539 - 32549432
Alignment:
Q  148 taccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgt 247  Q
    |||||| ||||| |||||| |||||||| ||||||  ||||||||| ||| ||||||| | |||| ||||  |||||||||| | ||||||| |||||||    
T  32549539 taccaatataacttcatcgacaattaactgccgatgaattttaaccgacgatagttaactaccgatgaaatttggggttaaacttgtcatttaatggtgt 32549440  T
Q  248 ttcttagc 255  Q
    ||||||||    
T  32549439 ttcttagc 32549432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 283
Target Start/End: Complemental strand, 4333073 - 4332934
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    |||||| ||||||||| ||||||| | ||||| | ||||  ||||||||| |   || |||| | |||| ||||| ||  |||||||| || |||| |||    
T  4333073 aaaatatcaaaataacttcatcgggagttaactgtcgatgaattttaaccgataataattaactaccgatgaaaattgacgttaaatttgttatttaatg 4332974  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    |||||||||||||||   || |||||||||||||||||||    
T  4332973 gtgtttcttagccttctgaatagtgtaaacaacaattttc 4332934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 30393180 - 30393319
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||| ||| ||||||||||  || ||||| |||||| ||| |||||||| |||||||||  | ||| ||||| ||| |||||||||| |||||||||    
T  30393180 aaaatactaaagtaacctcatcaacagttaactgccgatggatattaaccaatggtagttaaccgtcgatgaaaattggtgttaaattcgccattttatg 30393279  T
Q  244 gtgtttcttagcctttacaaaagtgtaaacaacaattttc 283  Q
    || ||||||| | ||    |||||||||||||||||||||    
T  30393280 gtatttcttaactttgtgcaaagtgtaaacaacaattttc 30393319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 10400155 - 10400074
Alignment:
Q  199 tagttaattgccgaagaaaaatggggttaaattcgtcattttatggtgtttcttagcctttacaaaagtgtaaacaacaatt 280  Q
    ||||||||||  |||||||| ||  |||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  10400155 tagttaattgttgaagaaaattgaagttacattcgtcattttatggtgtttcttagccttcacaagagtataaacaacaatt 10400074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 15301 - 15409
Alignment:
Q  144 aaaataccaaaataacctcatcggcaattaacggccgatagattttaaccaacggtagttaattgccgaagaaaaatggggttaaattcgtcattttatg 243  Q
    ||||||||||||||||||||||| |  ||||| |||||   |||||||||   ||||||||| ||   | ||||| |||||||||||| ||||||| |||    
T  15301 aaaataccaaaataacctcatcgactgttaactgccgacgaattttaaccggtggtagttaactg---atgaaaattggggttaaatttgtcatttcatg 15397  T
Q  244 gtgtttcttagc 255  Q
    ||||||||||||    
T  15398 gtgtttcttagc 15409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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