View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1739_high_102 (Length: 230)

Name: NF1739_high_102
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1739_high_102
NF1739_high_102
[»] chr2 (4 HSPs)
chr2 (1-230)||(44223301-44223530)
chr2 (1-223)||(44234123-44234345)
chr2 (1-211)||(44211139-44211348)
chr2 (5-103)||(43457698-43457796)
[»] chr4 (3 HSPs)
chr4 (11-173)||(2877058-2877220)
chr4 (5-165)||(2886833-2886993)
chr4 (5-162)||(2897383-2897540)
[»] chr7 (6 HSPs)
chr7 (1-120)||(39547624-39547743)
chr7 (11-117)||(39622230-39622336)
chr7 (1-126)||(39365925-39366050)
chr7 (1-120)||(39564403-39564522)
chr7 (1-126)||(39338572-39338697)
chr7 (1-135)||(39353406-39353540)
[»] chr3 (1 HSPs)
chr3 (10-84)||(49773102-49773176)
[»] chr1 (2 HSPs)
chr1 (28-120)||(2149038-2149130)
chr1 (1-120)||(2160994-2161113)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 44223301 - 44223530
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44223301 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgca 44223400  T
Q  101 ccactaacacccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 200  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223401 ccactaacacccttcaaaagcactaatctgtcttctctaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 44223500  T
Q  201 gtttgagaaaatacgaatcgttaaagatat 230  Q
    ||||||||||||| |||| |||||||||||    
T  44223501 gtttgagaaaatatgaattgttaaagatat 44223530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44234123 - 44234345
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || || |||||||||||     
T  44234123 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcg 44234222  T
Q  101 ccactaacacccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 200  Q
    ||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  44234223 ccactaacacccttcaaaagcactaatctgtcctctgtaacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaaatcattttt 44234322  T
Q  201 gtttgagaaaatacgaatcgtta 223  Q
    || |||||||||| |||| ||||    
T  44234323 gtctgagaaaatatgaattgtta 44234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 44211139 - 44211348
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44211139 atatccacctgttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgca 44211238  T
Q  101 ccactaacacccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctgccagttgaaataaaagtcatgtgagaaaagttattatt 200  Q
    || |||||||||||||||||||||| ||| || ||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||    
T  44211239 ccgctaacacccttcaaaagcactagtctgtcctctgtaacaccttgctccttcatttcctgccagttgaaat-aaagtcaagtgagaaaagttcttttt 44211337  T
Q  201 gtttgagaaaa 211  Q
    || || |||||    
T  44211338 gtctgcgaaaa 44211348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 43457698 - 43457796
Alignment:
Q  5 ccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcacca 103  Q
    |||||||| ||||| ||||| | ||||||||||| |||||| || ||||||||||| || ||||| ||||| || ||||| || |||||||||||||||    
T  43457698 ccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcacca 43457796  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 2877220 - 2877058
Alignment:
Q  11 gttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacac 110  Q
    |||||||| |||||||  |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||||||| |    
T  2877220 gttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactc 2877121  T
Q  111 ccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctgccagttgaaat 173  Q
    |||||||||||||||  ||||| ||| |||||||||| || |||||||||||||||| |||||    
T  2877120 ccttcaaaagcactagcctatcctctatcacaccttgatctttcatttcctgccagtcgaaat 2877058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 2886993 - 2886833
Alignment:
Q  5 ccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccac 104  Q
    ||||| |||||||| ||||||| ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||||||||||    
T  2886993 ccaccagttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccac 2886894  T
Q  105 taacacccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctgcca 165  Q
    |||||||||||||||| ||||||||||| |||   || |||||  ||||||||||||||||    
T  2886893 taacacccttcaaaagtactaatctatcctctagtaccccttgaaccttcatttcctgcca 2886833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 2897383 - 2897540
Alignment:
Q  5 ccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccac 104  Q
    ||||| ||||| || ||||||| ||||||||| | ||| ||||||||||||||||| || ||||| || ||||||||||| || ||||| ||||||||||    
T  2897383 ccaccggtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccac 2897482  T
Q  105 taacacccttcaaaagcactaatctatcttctctcacaccttgctccttcatttcctg 162  Q
    |||||||||||||||| ||||||||||| |||   ||||||||  |||||||||||||    
T  2897483 taacacccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg 2897540  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 39547624 - 39547743
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    ||||||||| ||||| || ||||  || |||||||||||||||||||| || || ||| | |||||||||| ||| |||||||| || || ||||| ||     
T  39547624 atatccaccagtttttctaccagaaagtacatccatcagagttgttttgcctgcaccagtcacacccatcagagcagtgagaacaccaggtctgaaagct 39547723  T
Q  101 ccactaacacccttcaaaag 120  Q
    ||||| ||||||||||||||    
T  39547724 ccacttacacccttcaaaag 39547743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 39622230 - 39622336
Alignment:
Q  11 gttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacac 110  Q
    ||||| || ||||| || |||||||||||||||||||| ||||| ||| | |||||||||| ||||||||||||  | || ||||||| |||||| ||||    
T  39622230 gtttttcttccagctagtacatccatcagagttgttttgccagcaccagtcacacccatcagagctgtgagaacagccggtctgaatgaaccactgacac 39622329  T
Q  111 ccttcaa 117  Q
    | |||||    
T  39622330 cattcaa 39622336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39366050 - 39365925
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    ||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |||||||||| ||| |||||||| || || ||||| ||     
T  39366050 atatccaccagtttttctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccatcagagccgtgagaacacctggtctgaaagct 39365951  T
Q  101 ccactaacacccttcaaaagcactaa 126  Q
    ||||||| |||||||| ||| |||||    
T  39365950 ccactaagacccttcagaagaactaa 39365925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 39564403 - 39564522
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    |||||| || |||||||| ||||  || |||||||||||||||||||| ||||| ||  | |||||||| | ||| |||||||| || || ||||| ||     
T  39564403 atatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaagct 39564502  T
Q  101 ccactaacacccttcaaaag 120  Q
    ||||| ||||||||||||||    
T  39564503 ccacttacacccttcaaaag 39564522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39338697 - 39338572
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    ||||||||| ||||| || ||||  || |||||||||||||||||||| ||||| ||  | |  ||||||| ||| |||||||| || || ||||| ||     
T  39338697 atatccaccagtttttctaccagaaagcacatccatcagagttgttttcccagcaccggtgatgcccatcagagcggtgagaacacctggtctgaaagct 39338598  T
Q  101 ccactaacacccttcaaaagcactaa 126  Q
    ||||| |||||||||||||| |||||    
T  39338597 ccacttacacccttcaaaagaactaa 39338572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 39353540 - 39353406
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    ||||||||| ||||| || ||||  || |||||||| ||||||||||| ||||| ||| | |  ||||||| ||| |||||||| || || ||||| ||     
T  39353540 atatccaccggtttttctaccagaaagcacatccattagagttgtttttccagcaccagtgatgcccatcagagccgtgagaacacctggtctgaaagct 39353441  T
Q  101 ccactaacacccttcaaaagcactaatctatcttc 135  Q
    ||||| |||||||| ||||| |||||  |||||||    
T  39353440 ccacttacaccctttaaaagaactaacttatcttc 39353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 49773176 - 49773102
Alignment:
Q  10 tgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaac 84  Q
    ||||||||| |||| ||| |||||||| ||||||||||||||||||||||||| |||||| | |||||| |||||    
T  49773176 tgttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgtcagaac 49773102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 2149038 - 2149130
Alignment:
Q  28 aacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgcaccactaacacccttcaaaag 120  Q
    ||||||||| | ||| || || ||||| ||||||||||||||||||||||| || || || || || || |||||||||||||||||||||||    
T  2149038 aacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccaggtctaaaagcaccactaacacccttcaaaag 2149130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 2160994 - 2161113
Alignment:
Q  1 atatccacctgttttcctcccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaaccccgggcctgaatgca 100  Q
    ||||||||| |||||||| ||||| | ||||||||| ||||| || || || || |||||||||||||||||||| || || || || ||||| || ||     
T  2160994 atatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttacacccatcaaagcagttagtactccaggcctaaaggcg 2161093  T
Q  101 ccactaacacccttcaaaag 120  Q
    ||| | | ||||||||||||    
T  2161094 ccattgatacccttcaaaag 2161113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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