View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_103 (Length: 227)
Name: NF1739_high_103
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_103 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 10290717 - 10290913
Alignment:
| Q |
17 |
atgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattccaacttccatgcacctcaaaaaggcccttcctt |
116 |
Q |
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| T |
10290717 |
atgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattccaacttccatgcacctcaaaaaggcccttcctt |
10290816 |
T |
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| Q |
117 |
tcttaaaaaatttggcactacaatagtttctctaaacctacacatgtggcttttccttctgctccttcattgcatatgatgctaaagccaccagctg |
213 |
Q |
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| T |
10290817 |
tcttaaaacatttggcactacaatagtttctctaaacctacacatgtggcttttccttctgctccttcattgcatataatgctaaagccaccagctg |
10290913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 10299125 - 10299206
Alignment:
| Q |
17 |
atgagttagccaaactgatagaggattttatgcctcaagttctacttgatgatcattcagcttattccaacttccatgcacc |
98 |
Q |
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|||||||||| |||||||||||||||| | |||||||||||| |||||||||||||||| || ||||||||||| |||||| |
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| T |
10299125 |
atgagttagctaaactgatagaggattctgtgcctcaagttccacttgatgatcattcaactacttccaacttccttgcacc |
10299206 |
T |
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