View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_106 (Length: 220)
Name: NF1739_high_106
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_106 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 38843187 - 38843000
Alignment:
| Q |
16 |
agacattgaagcacataccgtaagttttcctattttccacatgcatgcacaccaaaattttcatattcttgtttgttcatatgtttgtaattgtaaatgc |
115 |
Q |
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| T |
38843187 |
agacattgaagcacatactgtaagttttcctattttccacatgcatgcacaccaaaattttcatattcttgttg----atatttttgtaattgtaaatgc |
38843092 |
T |
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| Q |
116 |
agccaggtgcaaaggtgaactatccaataatttctgatcctaaaagagaaatcatcaagcaactcaacatggttgatcctgatgagaaagat |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38843091 |
agccaggtgcaaaggttaactatccaataatttctgatcctaaaagagaaatcatcaagcaactcaacatggttgatcctgatgagaaagat |
38843000 |
T |
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