View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_high_11 (Length: 541)
Name: NF1739_high_11
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 6525038 - 6525552
Alignment:
| Q |
12 |
cagagaggaggatggagcttccagcctttatatttttcatgctgttctagaacggttcnnnnnnnnnnnnggcaaagtctagaaagattatttgatgaag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6525038 |
cagagaggaggatggagcttccagcctttatatttttcatgctgttctagaacggttcttttttatttttggcaaagtctagaaaggttatttgatgaag |
6525137 |
T |
|
| Q |
112 |
tttccaacaatagccagctattttttggtttaggcatctttcactttcaagtttgaaaatttactcaaaaagctttagcaatctgagaaaatgccttact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6525138 |
tttccaacaatagccagctattttttggtttaggcatctttcactttcaagtttgaaaatttactcaaaaagctttagcaatctgagaaaatgcattact |
6525237 |
T |
|
| Q |
212 |
tatgtgatcataaatggttttgtagacaaatatagaaaaaatgcaggtgaatgattacaacactatttgttaaatgtgattgaaagttacaactcaataa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6525238 |
tatgtgatcataaatggttttgtagacaaatatagaaaaaatgcaggtgaatgattacaacactatttgttaaatgtgattgaaagttacaactcaaaaa |
6525337 |
T |
|
| Q |
312 |
gtaaagtatgtttgacatgtaataaaactacaaactggtggaaaagaaatgtgtgtattcttactgttaaaaattgacatgtattcttaaatcacatttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6525338 |
gtaaagtatgtttgacatgtaataaaactacaaactggtggaaaagaaatgtgtgtattcttactgttaaaaattgacatgtattcttaaatcacatttt |
6525437 |
T |
|
| Q |
412 |
tattatttaacctaccgccaatttgtcatctggacaaaacgatgcaatccagatccaactacgctccaaacatttgaactgctatcatgaaaaatctcaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6525438 |
tattatttaacctaccgccaatttgtcatctggacaaaacgatgcaatccagatccaactacgctccaaacatttgaactgctatcatgaaaaatctcaa |
6525537 |
T |
|
| Q |
512 |
aatcactgattgatg |
526 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6525538 |
aatcactgattgatg |
6525552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University