View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1739_high_15 (Length: 494)
Name: NF1739_high_15
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 101 - 480
Target Start/End: Original strand, 28181681 - 28182060
Alignment:
| Q |
101 |
tagttaactaggttatctattcccttcattgtactgagtttatttatgttctttcagttatgttgtcatcatattattcttttatatatgatttatatac |
200 |
Q |
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| T |
28181681 |
tagttaactaggttctctatttccttcattgtactgagtttatttatgttctttcagttatgttgtcatcatattattcttttatatatgatttatatac |
28181780 |
T |
|
| Q |
201 |
aaactagttttcagtctctaagctttgataatgatcatattctttgatgaacagttgcaggacaacatcgacctcttttgccacacaaggcacaatatca |
300 |
Q |
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| T |
28181781 |
aaactagttttcagtctctaagctttgataatgatcatattctttgatgaacagttgcaggacaacatcgacctcttttgccacacaaggcacaatatca |
28181880 |
T |
|
| Q |
301 |
attccattctaaacgagtatgtggatttttaatgaagtttacctgtatttggtttttatgtctttgaactttgtgaagatcactagttaagtttgtgcag |
400 |
Q |
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| T |
28181881 |
attccattctaaacgagtatgtggatttttaatgaagtttacctgtatttggtttttatgtctttgaactttgtgaagatcactagttaagtttgtgcag |
28181980 |
T |
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| Q |
401 |
catgagtgagatgcctggcattatgagccaaatgccgccactgcctgttgccattaacgaggatcttgcaagaagtattt |
480 |
Q |
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| T |
28181981 |
catgagtgagatgcctggcattatgagccaaatgccgccactgcctgttgccattaacgaggatcttgcaagaagtattt |
28182060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28181629 - 28181677
Alignment:
| Q |
1 |
actttttaattaatagaaataatgctttgatgaatttctaaatttttat |
49 |
Q |
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| T |
28181629 |
actttttaattaatagaaataatgctttgatgaatttctaaatttttat |
28181677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 13037209 - 13037300
Alignment:
| Q |
387 |
ttaagtttgtgcagcatgagtgagatgcctggcattatgagccaaatgccgccactgcctgttgccattaacgaggatcttgcaagaagtat |
478 |
Q |
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| T |
13037209 |
ttaagtttgtgcagcatgagagcgatgcctggtataatgagccaaatgcttccacttcctgtgtcgattgacgaggaccttgcaagtagtat |
13037300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 13037002 - 13037113
Alignment:
| Q |
216 |
ctctaagctt-tgataatgatcatattctttgatgaacagttgcaggacaacatcgacctcttttgccacacaaggcacaatatcaattccattctaaac |
314 |
Q |
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| T |
13037002 |
ctctaagcttgtgatgatgatcattttcatttataaacagttgcaggataacatcgacctcttcagtcagacacggcacaacattagtaccattcttgat |
13037101 |
T |
|
| Q |
315 |
gagtatgtggat |
326 |
Q |
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|||||||||||| |
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| T |
13037102 |
gagtatgtggat |
13037113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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