View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1739_high_16 (Length: 491)
Name: NF1739_high_16
Description: NF1739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1739_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 476
Target Start/End: Complemental strand, 45068912 - 45068440
Alignment:
| Q |
4 |
atgtcgaagaatataaatgttacaggtggttgtttttattttctgcatgcatagattaattactgttgtcttatgcaggttatttgtgtgatttctatag |
103 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45068912 |
atgtctaagaaaataaatgttacaggtggttgtttttattttctgtatgcatagattaattactgttgttttatgcaggttatttgtgtgatttctatag |
45068813 |
T |
|
| Q |
104 |
ttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagt |
203 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45068812 |
ttttgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccatgcaatcaattgccgaaaacacaatgcagt |
45068713 |
T |
|
| Q |
204 |
tttaacagattttggtggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggt |
303 |
Q |
| |
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||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068712 |
tttaacagattttggtgctgttggtgacggcaaaacccttaacacaaaggcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggt |
45068613 |
T |
|
| Q |
304 |
gcacaacttattgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
45068612 |
gcacaacttattgttccaccaggtaaatggctaacaggaagcttcaatctcacaagccatttcactctttttctccaaaagggtgctgtcattcttgcat |
45068513 |
T |
|
| Q |
404 |
ctcaggtataatataaagacttttgttttgtagtattttttaaaattttataatcaattaaagggtcatttat |
476 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068512 |
ctcaggtataatataaagacttttgttttgtagtattttttaaaattttataatcaattaaagggtcatttat |
45068440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 45079666 - 45079264
Alignment:
| Q |
10 |
aagaatataaatgttacaggtggttgtttttattttctgcatgcatagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctga |
109 |
Q |
| |
|
||||||||||| |||||| ||| || ||| |||||||||| ||| |||| | || || |||| || ||||||||||| ||||||| ||| ||||||||| |
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|
| T |
45079666 |
aagaatataaacgttacatgtgattatttatattttctgcgtgc-tagacttataaccattgttttgtgcaggttattggtgtgatatctgtagttctga |
45079568 |
T |
|
| Q |
110 |
tattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaac |
209 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||| |||||||||||| |
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| T |
45079567 |
tattgggatcactagcagaatgcagagtaccaagtagtattaaattgaacaactttgattatcctgcaatcaattgcagaaaacacagtgcagttttaac |
45079468 |
T |
|
| Q |
210 |
agattttggtggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaa |
309 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
45079467 |
agattttggtgctgttggtgatggcaaaacccttaacacaaaagcttttaatgcagcaataaccaaccttagccaatatgcaaatgatggtggtgcacaa |
45079368 |
T |
|
| Q |
310 |
cttattgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcagg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
45079367 |
cttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttctccaaaaagatgctgttattcttggatctcagg |
45079268 |
T |
|
| Q |
410 |
tata |
413 |
Q |
| |
|
|||| |
|
|
| T |
45079267 |
tata |
45079264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 53 - 413
Target Start/End: Complemental strand, 45083915 - 45083555
Alignment:
| Q |
53 |
catagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaa |
152 |
Q |
| |
|
|||||||| || ||| |||| || |||||||||| ||||||| ||| ||||| ||||||||| | ||||||||||||||||| |||||||| || ||| |
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|
| T |
45083915 |
catagatttatcactattgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactagcagaatgcagaataccaagtattagtaa |
45083816 |
T |
|
| Q |
153 |
attgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatggaaaaacccttaacacaaaa |
252 |
Q |
| |
|
|||||| | |||||| || || || ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45083815 |
attgaataactttgattatccagctatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaag |
45083716 |
T |
|
| Q |
253 |
gcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaacaggaagtttcaatc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
45083715 |
gcatttaattcagcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaactggaagcttcaatc |
45083616 |
T |
|
| Q |
353 |
tcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
413 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45083615 |
tcacaagccatttcactctttttctccaaaaagatgctgtcattcttgcatctcaggtata |
45083555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 77 - 413
Target Start/End: Complemental strand, 45076476 - 45076140
Alignment:
| Q |
77 |
tgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgc |
176 |
Q |
| |
|
||||||||||| ||||||| ||| || |||||||||| | ||| |||||||||||| |||||||||||||| ||||||||| | |||||| || || || |
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|
| T |
45076476 |
tgcaggttattggtgtgatctctgtacttctgatatttggttcattagcagaatgcaaagaaccaagtagtagtaaattgaagaactttgattatccagc |
45076377 |
T |
|
| Q |
177 |
aatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatggaaaaacccttaacacaaaagcatttaattcagcaataaccaat |
276 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
45076376 |
tatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaat |
45076277 |
T |
|
| Q |
277 |
cttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
45076276 |
cttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaaccggaagcttcaatctcacaagccatttcactctttttc |
45076177 |
T |
|
| Q |
377 |
tccaaaaagatgctgtcattcttgcatctcaggtata |
413 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
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|
| T |
45076176 |
tccaaaaagattctgtcattcttgcatctcaggtata |
45076140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 164 - 412
Target Start/End: Complemental strand, 34506185 - 34505937
Alignment:
| Q |
164 |
ttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatggaaaaacccttaacacaaaagcatttaattc |
263 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |
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|
| T |
34506185 |
ttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatac |
34506086 |
T |
|
| Q |
264 |
agcaataaccaatcttagccaatatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggctaacaggaagtttcaatctcacaagccat |
363 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |
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|
| T |
34506085 |
tgcaataaccaaacttagccagtatgcaaatgatggtggtgcacaacttattgttccaccaggtaaatggttaactggaagcttcaatctcacaagccat |
34505986 |
T |
|
| Q |
364 |
ttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggtat |
412 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
34505985 |
ttcactctttttctccaaaaaggcgcggtcattcttggatctcaggtat |
34505937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34506245 - 34506189
Alignment:
| Q |
77 |
tgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgca |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
34506245 |
tgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgca |
34506189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 411
Target Start/End: Complemental strand, 13609407 - 13609315
Alignment:
| Q |
319 |
ccaccaggtaaatggctaacaggaagtttcaatctcacaagccatttcaccctttttctccaaaaagatgctgtcattcttgcatctcaggta |
411 |
Q |
| |
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|||||||| || ||||| || || ||||||||||| || |||||| ||||||| ||| | |||||| |||||||||| ||| |||||||||| |
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| T |
13609407 |
ccaccaggaaactggcttactggtagtttcaatcttaccagccatctcaccctctttttggaaaaaggtgctgtcattattggatctcaggta |
13609315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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